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POMT1 protein O-mannosyltransferase 1 [ Bos taurus (cattle) ]

Gene ID: 617609, updated on 3-Jul-2020

Summary

Official Symbol
POMT1provided by VGNC
Official Full Name
protein O-mannosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:33158
See related
BGD:BT12900; Ensembl:ENSBTAG00000010805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See POMT1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 11 NC_037338.1 (101623025..101642469)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 11 AC_000168.1 (101650162..101669962)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene proline rich coiled-coil 2B Neighboring gene small nucleolar RNA SNORD62 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene uridine-cytidine kinase 1 Neighboring gene proline rich transmembrane protein 1B Neighboring gene Rap guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC112448848

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
protein O-mannosyl-transferase 1
NP_001073799.1
XP_005213460.1
XP_005213462.1
XP_005213463.1
XP_005213464.1
XP_010808790.1
XP_010808791.1
XP_024854971.1
XP_024854972.1
XP_024854973.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080330.3NP_001073799.1  protein O-mannosyl-transferase 1

    See identical proteins and their annotated locations for NP_001073799.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142282
    UniProtKB/TrEMBL
    Q0MVC9
    Conserved Domains (1) summary
    COG1928
    Location:20720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    101623025..101642469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010810489.3XP_010808791.1  protein O-mannosyl-transferase 1 isoform X3

    Conserved Domains (4) summary
    smart00472
    Location:453503
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    pfam02366
    Location:20278
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam02815
    Location:322484
    MIR; MIR domain
    pfam16192
    Location:532684
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
  2. XM_005213403.4XP_005213460.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005213460.1

    Conserved Domains (4) summary
    smart00472
    Location:453503
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:20732
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20278
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:532730
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
  3. XM_024999203.1XP_024854971.1  protein O-mannosyl-transferase 1 isoform X2

    Related
    ENSBTAP00000014315.4, ENSBTAT00000014315.5
    Conserved Domains (1) summary
    COG1928
    Location:20720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
  4. XM_005213405.4XP_005213462.1  protein O-mannosyl-transferase 1 isoform X4

    See identical proteins and their annotated locations for XP_005213462.1

    Conserved Domains (1) summary
    COG1928
    Location:2603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
  5. XM_010810488.3XP_010808790.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_010808790.1

    Conserved Domains (4) summary
    smart00472
    Location:453503
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:20732
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20278
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:532730
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
  6. XM_024999204.1XP_024854972.1  protein O-mannosyl-transferase 1 isoform X4

    Conserved Domains (1) summary
    COG1928
    Location:2603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
  7. XM_005213406.3XP_005213463.1  protein O-mannosyl-transferase 1 isoform X4

    See identical proteins and their annotated locations for XP_005213463.1

    Conserved Domains (1) summary
    COG1928
    Location:2603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
  8. XM_005213407.3XP_005213464.1  protein O-mannosyl-transferase 1 isoform X4

    See identical proteins and their annotated locations for XP_005213464.1

    Conserved Domains (1) summary
    COG1928
    Location:2603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
  9. XM_024999205.1XP_024854973.1  protein O-mannosyl-transferase 1 isoform X5

    Conserved Domains (1) summary
    cl25703
    Location:2568
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

RNA

  1. XR_001501416.2 RNA Sequence

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