U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

POMT1 protein O-mannosyltransferase 1 [ Bos taurus (cattle) ]

Gene ID: 617609, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
POMT1provided by VGNC
Official Full Name
protein O-mannosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:33158
See related
BGD:BT12900; Ensembl:ENSBTAG00000010805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (101623025..101642817)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene proline rich coiled-coil 2B Neighboring gene small nucleolar RNA SNORD62 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene uridine-cytidine kinase 1 Neighboring gene proline rich transmembrane protein 1B Neighboring gene Rap guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC112448847

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase 1
NP_001073799.1
XP_005213460.1
XP_005213463.1
XP_005213464.1
XP_010808790.1
XP_024854971.1
XP_024854973.1
XP_059747515.1
XP_059747516.1
XP_059747517.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080330.3 → NP_001073799.1  protein O-mannosyl-transferase 1

    See identical proteins and their annotated locations for NP_001073799.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142282
    UniProtKB/TrEMBL
    Q0MVC9
    Conserved Domains (1) summary
    COG1928
    Location:20 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    101623025..101642817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059891532.1 → XP_059747515.1  protein O-mannosyl-transferase 1 isoform X3

    Related
    ENSBTAP00000014315.5, ENSBTAT00000014315.6

  2. XM_005213403.5 → XP_005213460.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005213460.1

    Related
    ENSBTAP00000096156.1, ENSBTAT00000099728.1
    Conserved Domains (4) summary
    smart00472
    Location:453 → 503
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:20 → 732
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20 → 278
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:532 → 730
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  3. XM_024999203.2 → XP_024854971.1  protein O-mannosyl-transferase 1 isoform X2

    UniProtKB/TrEMBL
    Q0MVC9
    Conserved Domains (1) summary
    COG1928
    Location:20 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  4. XM_010810488.4 → XP_010808790.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_010808790.1

    Conserved Domains (4) summary
    smart00472
    Location:453 → 503
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:20 → 732
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20 → 278
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:532 → 730
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  5. XM_059891534.1 → XP_059747517.1  protein O-mannosyl-transferase 1 isoform X5

  6. XM_005213406.4 → XP_005213463.1  protein O-mannosyl-transferase 1 isoform X4

    See identical proteins and their annotated locations for XP_005213463.1

    Conserved Domains (1) summary
    COG1928
    Location:2 → 603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  7. XM_059891533.1 → XP_059747516.1  protein O-mannosyl-transferase 1 isoform X4

  8. XM_005213407.4 → XP_005213464.1  protein O-mannosyl-transferase 1 isoform X4

    See identical proteins and their annotated locations for XP_005213464.1

    Conserved Domains (1) summary
    COG1928
    Location:2 → 603
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  9. XM_024999205.2 → XP_024854973.1  protein O-mannosyl-transferase 1 isoform X6

    Conserved Domains (1) summary
    cl25703
    Location:2 → 568
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.