U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm38396 predicted gene, 38396 [ Mus musculus (house mouse) ]

Gene ID: 626854, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Gm38396provided by MGI
Official Full Name
predicted gene, 38396provided by MGI
Primary source
MGI:MGI:5618688
See related
AllianceGenome:MGI:5618688
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in bladder adult (RPKM 2.5), placenta adult (RPKM 1.9) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
17 A3.1; 17
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (17399167..17426652)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (17178911..17206397)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41945 Neighboring gene zinc finger protein 960 Neighboring gene zinc finger protein 97 Neighboring gene STARR-seq mESC enhancer starr_41946 Neighboring gene STARR-positive B cell enhancer mm9_chr17:17316083-17316384 Neighboring gene STARR-seq mESC enhancer starr_41947 Neighboring gene STARR-positive B cell enhancer ABC_E954 Neighboring gene predicted gene 5165 Neighboring gene STARR-positive B cell enhancer ABC_E166 Neighboring gene predicted gene 6712

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC626854

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357988.1 → NP_001344917.1  uncharacterized protein LOC626854

    Status: VALIDATED

    Source sequence(s)
    AC117220, AC129328
    Conserved Domains (3) summary
    COG5048
    Location:157 → 562
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:13 → 53
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    17399167..17426652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249939.2 → XP_030105799.1  uncharacterized protein LOC626854 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:116 → 521
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:428 → 448
    ZF_C2H2; C2H2 Zn finger [structural motif]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039232.1: Suppressed sequence

    Description
    NM_001039232.1: This RefSeq was removed because there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.