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H2-T25 histocompatibility-2, T region locus 25 [ Mus musculus (house mouse) ]

Gene ID: 630294, updated on 8-Feb-2024

Summary

Official Symbol
H2-T25provided by MGI
Official Full Name
histocompatibility-2, T region locus 25provided by MGI
Primary source
MGI:MGI:1890744
See related
Ensembl:ENSMUSG00000092243
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H2-t9; Gm7030
Expression
Broad expression in small intestine adult (RPKM 179.0), large intestine adult (RPKM 159.4) and 16 other tissues See more
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Genomic context

Location:
17 B1; 17 18.94 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36438371..36440400, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36127609..36129425, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42486 Neighboring gene histocompatibility 2, T region locus, pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10950 Neighboring gene ribosomal protein S6 pseudogene Neighboring gene histocompatibility 2, T region locus 10 Neighboring gene STARR-positive B cell enhancer ABC_E169 Neighboring gene histocompatibility 2, T region pseudogene Neighboring gene RIKEN cDNA 2410017I17 gene Neighboring gene predicted gene 10499 Neighboring gene histocompatibility 2, T region locus 26

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
uncharacterized protein LOC630294
Names
MHC class Ib T9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177467.2NP_001170938.1  uncharacterized protein LOC630294 precursor

    See identical proteins and their annotated locations for NP_001170938.1

    Status: VALIDATED

    Source sequence(s)
    CT030728
    Consensus CDS
    CCDS50101.1
    UniProtKB/TrEMBL
    E9PV42, E9Q5B3, Q0WXH6
    Related
    ENSMUSP00000133748.2, ENSMUST00000172968.2
    Conserved Domains (2) summary
    pfam00129
    Location:27198
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    cd07698
    Location:205285
    IgC1_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain, alpha3 immunoglobulin domain; member of the C1-set of Ig superfamily (IgSF) domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    36438371..36440400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)