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Fer1l6 fer-1-like 6 (C. elegans) [ Mus musculus (house mouse) ]

Gene ID: 631797, updated on 23-Jun-2021

Summary

Official Symbol
Fer1l6provided by MGI
Official Full Name
fer-1-like 6 (C. elegans)provided by MGI
Primary source
MGI:MGI:3645398
See related
Ensembl:ENSMUSG00000037106
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG631797
Expression
Biased expression in colon adult (RPKM 6.1), large intestine adult (RPKM 2.6) and 4 other tissues See more
Orthologs
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Genomic context

See Fer1l6 in Genome Data Viewer
Location:
15; 15 D1
Exon count:
42
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (58381897..58536936)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58510048..58665087)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (58341609..58494449)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53238 Neighboring gene annexin A13 Neighboring gene family with sequence similarity 91, member A1 Neighboring gene predicted gene, 36451 Neighboring gene predicted gene, 41329 Neighboring gene transmembrane protein 65 Neighboring gene predicted gene, 24041

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in plasma membrane organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370912.1NP_001357841.1  fer-1-like protein 6

    Status: VALIDATED

    Source sequence(s)
    AC107742, AC107775, AC163393
    Related
    ENSMUSP00000125718.2, ENSMUST00000161028.2
    Conserved Domains (8) summary
    cd04011
    Location:89198
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:838971
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:253404
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:13721495
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08374
    Location:16121745
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    pfam08150
    Location:725796
    FerB; FerB (NUC096) domain
    pfam08151
    Location:196245
    FerI; FerI (NUC094) domain
    pfam16165
    Location:17561868
    Ferlin_C; Ferlin C-terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    58381897..58536936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521609.3XP_006521672.2  fer-1-like protein 6 isoform X1

    See identical proteins and their annotated locations for XP_006521672.2

    Conserved Domains (8) summary
    cd04011
    Location:79188
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:828961
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:243394
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:13621485
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08374
    Location:16021735
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    pfam08150
    Location:715786
    FerB; FerB (NUC096) domain
    pfam08151
    Location:186235
    FerI; FerI (NUC094) domain
    pfam16165
    Location:17461858
    Ferlin_C; Ferlin C-terminus
  2. XM_006521610.5XP_006521673.1  fer-1-like protein 6 isoform X2

    See identical proteins and their annotated locations for XP_006521673.1

    Conserved Domains (4) summary
    cd04037
    Location:485608
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08374
    Location:725858
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    pfam16165
    Location:869981
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:184
    C2; C2 domain
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