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Rbm46 RNA binding motif protein 46 [ Mus musculus (house mouse) ]

Gene ID: 633285, updated on 23-Jun-2021

Summary

Official Symbol
Rbm46provided by MGI
Official Full Name
RNA binding motif protein 46provided by MGI
Primary source
MGI:MGI:3645057
See related
Ensembl:ENSMUSG00000033882
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm761; EG633285
Expression
Biased expression in testis adult (RPKM 4.6), placenta adult (RPKM 1.1) and 4 other tissues See more
Orthologs
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Genomic context

See Rbm46 in Genome Data Viewer
Location:
3; 3 E3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (82743828..82783814, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (82836521..82876512, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (82641155..82680405, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y2 Neighboring gene predicted gene, 29999 Neighboring gene RNA binding motif protein 46, opposite strand Neighboring gene lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) Neighboring gene predicted gene, 30097 Neighboring gene fibrinogen gamma chain

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
probable RNA-binding protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146328.2NP_001139800.1  probable RNA-binding protein 46 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC102130, AC158935
    Consensus CDS
    CCDS50938.1
    UniProtKB/Swiss-Prot
    P86049
    Related
    ENSMUSP00000045511.7, ENSMUST00000048647.14
    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. NM_001277170.1NP_001264099.1  probable RNA-binding protein 46

    Status: VALIDATED

    Source sequence(s)
    AC102130, AC158935, AV254043, CJ047211
    Consensus CDS
    CCDS71255.1
    UniProtKB/TrEMBL
    S4R1Y9
    Related
    ENSMUSP00000138429.2, ENSMUST00000182818.3
    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    82743828..82783814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252743.2XP_030108603.1  probable RNA-binding protein 46 isoform X2

    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. XM_036163209.1XP_036019102.1  probable RNA-binding protein 46 isoform X2

    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  3. XM_006501850.4XP_006501913.1  probable RNA-binding protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006501913.1

    UniProtKB/Swiss-Prot
    P86049
    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  4. XM_006501851.3XP_006501914.1  probable RNA-binding protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006501914.1

    UniProtKB/Swiss-Prot
    P86049
    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  5. XM_011240188.3XP_011238490.1  probable RNA-binding protein 46 isoform X1

    See identical proteins and their annotated locations for XP_011238490.1

    UniProtKB/Swiss-Prot
    P86049
    Conserved Domains (1) summary
    TIGR01648
    Location:5464
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
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