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Itih5l-ps inter-alpha (globulin) inhibitor H5-like, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 634882, updated on 23-Jun-2021

Summary

Official Symbol
Itih5l-psprovided by MGI
Official Full Name
inter-alpha (globulin) inhibitor H5-like, pseudogeneprovided by MGI
Primary source
MGI:MGI:2685232
See related
Ensembl:ENSMUSG00000087149
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm386; Itih5l
Expression
Biased expression in limb E14.5 (RPKM 3.1) and CNS E14 (RPKM 0.3) See more
Orthologs
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Genomic context

See Itih5l-ps in Genome Data Viewer
Location:
X; X F3
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (149609892..149640403)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (150826917..150857407)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (147261515..147291486)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 18773 Neighboring gene predicted gene, 24907 Neighboring gene MAGE family member D2 Neighboring gene predicted gene, 54086 Neighboring gene polypyrimidine tract binding protein 1 pseudogene Neighboring gene guanine nucleotide binding protein-like 3 (nucleolar)-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

General protein information

Preferred Names
inter-alpha-trypsin inhibitor heavy chain H6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289875.1NP_001276804.1  inter-alpha-trypsin inhibitor heavy chain H6 precursor

    Status: INFERRED

    Source sequence(s)
    AL672282
    Related
    ENSMUST00000145639.8
    Conserved Domains (5) summary
    cd01461
    Location:291475
    vWA_interalpha_trypsin_inhibitor; vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to ...
    TIGR03788
    Location:62641
    marine_srt_targ; marine proteobacterial sortase target protein
    pfam06668
    Location:11001278
    ITI_HC_C; Inter-alpha-trypsin inhibitor heavy chain C-terminus
    cl00447
    Location:454513
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
    cl02699
    Location:51161
    VIT; Vault protein inter-alpha-trypsin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    149609892..149640403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318592.3XP_017174081.1  inter-alpha-trypsin inhibitor heavy chain H6 isoform X1

    Conserved Domains (5) summary
    cd01461
    Location:291475
    vWA_interalpha_trypsin_inhibitor; vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to ...
    TIGR03788
    Location:62641
    marine_srt_targ; marine proteobacterial sortase target protein
    pfam03154
    Location:6331007
    Atrophin-1; Atrophin-1 family
    pfam06668
    Location:11001229
    ITI_HC_C; Inter-alpha-trypsin inhibitor heavy chain C-terminus
    cl02699
    Location:51161
    VIT; Vault protein inter-alpha-trypsin domain
  2. XM_017318593.3XP_017174082.1  inter-alpha-trypsin inhibitor heavy chain H6 isoform X2

    Conserved Domains (4) summary
    cd01461
    Location:291475
    vWA_interalpha_trypsin_inhibitor; vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to ...
    TIGR03788
    Location:62641
    marine_srt_targ; marine proteobacterial sortase target protein
    pfam03154
    Location:6331007
    Atrophin-1; Atrophin-1 family
    cl02699
    Location:51161
    VIT; Vault protein inter-alpha-trypsin domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_003597.1: Suppressed sequence

    Description
    NR_003597.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
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