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Tnmd tenomodulin [ Mus musculus (house mouse) ]

Gene ID: 64103, updated on 5-Mar-2024

Summary

Official Symbol
Tnmdprovided by MGI
Official Full Name
tenomodulinprovided by MGI
Primary source
MGI:MGI:1929885
See related
Ensembl:ENSMUSG00000031250 AllianceGenome:MGI:1929885
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TeM; ChM1L; Bricd4; 1110017I01Rik
Summary
Acts upstream of or within endothelial cell morphogenesis; negative regulation of angiogenesis; and negative regulation of endothelial cell proliferation. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in several structures, including brain; limb; sensory organ; skeletal system; and spinal cord. Orthologous to human TNMD (tenomodulin). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in limb E14.5 (RPKM 26.1) and CNS E14 (RPKM 2.6) See more
Orthologs
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Genomic context

See Tnmd in Genome Data Viewer
Location:
X E3; X 55.47 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (132751757..132766326)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (133851008..133865577)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene Neighboring gene protocadherin 19 Neighboring gene STARR-seq mESC enhancer starr_47952 Neighboring gene predicted gene, 26851 Neighboring gene STARR-seq mESC enhancer starr_47953 Neighboring gene tetraspanin 6 Neighboring gene sushi-repeat-containing protein, X-linked 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (3) 

General protein information

Preferred Names
tenomodulin
Names
chondromodulin-1-like protein
chondromodulin-I-like protein
mChM1L
mTeM
myodulin
tendin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022322.2NP_071717.1  tenomodulin

    See identical proteins and their annotated locations for NP_071717.1

    Status: VALIDATED

    Source sequence(s)
    BC049944
    Consensus CDS
    CCDS30386.1
    UniProtKB/Swiss-Prot
    Q8CET4, Q9EP64
    Related
    ENSMUSP00000033602.9, ENSMUST00000033602.9
    Conserved Domains (1) summary
    smart01039
    Location:93186
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    132751757..132766326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)