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Ptl prothoraxless [ Tribolium castaneum (red flour beetle) ]

Gene ID: 641545, updated on 12-Apr-2024

Summary

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Gene symbol
Ptl
Gene description
prothoraxless
Locus tag
TcasGA2_TC000912
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
Antp
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See Ptl in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (6886490..6896837, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (8329086..8339433)

Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene fushi tarazu Neighboring gene uncharacterized LOC135265861 Neighboring gene uncharacterized LOC135265930 Neighboring gene ultrabithorax

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogeny of the insect homeobox gene (hox) cluster. Dhawan S, et al. Genomics Proteomics Bioinformatics, 2005 Feb. PMID 16144521, Free PMC Article
  2. Sequence of the Tribolium castaneum homeotic complex: the region corresponding to the Drosophila melanogaster antennapedia complex. Brown SJ, et al. Genetics, 2002 Mar. PMID 11901122, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prothoraxless
Names
AUGUSTUS-3.0.2_00912
GLEAN_00912
antennapedia
antp ortholog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039416.1 → NP_001034505.1  prothoraxless

    See identical proteins and their annotated locations for NP_001034505.1

    Status: PROVISIONAL

    Source sequence(s)
    AF228509
    UniProtKB/TrEMBL
    Q9NHA7
    Conserved Domains (1) summary
    pfam00046
    Location:248 → 300
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

    Range
    6886490..6896837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials