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NPIPA2 nuclear pore complex interacting protein family member A2 [ Homo sapiens (human) ]

Gene ID: 642799, updated on 11-Jul-2021

Summary

Official Symbol
NPIPA2provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member A2provided by HGNC
Primary source
HGNC:HGNC:41979
See related
Ensembl:ENSG00000254852
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIP; NPIPA1
Expression
Ubiquitous expression in skin (RPKM 20.2), testis (RPKM 15.4) and 25 other tissues See more
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Genomic context

See NPIPA2 in Genome Data Viewer
Location:
16p13.11
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (14745595..14765448)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (14844670..14859305)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene group 10 secretory phospholipase A2-like Neighboring gene nuclear pore complex interacting protein family member A3 Neighboring gene collagen alpha-3(IX) chain-like Neighboring gene uncharacterized LOC105376749 Neighboring gene ATP binding cassette subfamily C member 6 pseudogene 2 Neighboring gene NODAL modulator 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Gene Ontology Provided by GOA

Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nuclear pore complex-interacting protein family member A2
Names
Nuclear pore complex-interacting protein family member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277324.3NP_001264253.1  nuclear pore complex-interacting protein family member A2 isoform 2

    See identical proteins and their annotated locations for NP_001264253.1

    Status: VALIDATED

    Source sequence(s)
    AC136443
    Consensus CDS
    CCDS59263.1
    UniProtKB/Swiss-Prot
    Q9UND3
    UniProtKB/TrEMBL
    A0A0B4J2F6
    Related
    ENSP00000446882.1, ENST00000553201.1
    Conserved Domains (1) summary
    pfam06409
    Location:22287
    NPIP; Nuclear pore complex interacting protein (NPIP)
  2. NM_001395485.2NP_001382414.1  nuclear pore complex-interacting protein family member A2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC136443
  3. NM_001395486.2NP_001382415.1  nuclear pore complex-interacting protein family member A2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC136443

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    14745595..14765448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024450381.1XP_024306149.1  nuclear pore complex-interacting protein family member A2 isoform X1

    Conserved Domains (2) summary
    pfam06409
    Location:70269
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  2. XM_024450387.1XP_024306155.1  nuclear pore complex-interacting protein family member A2 isoform X4

    Conserved Domains (2) summary
    pfam06409
    Location:70269
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  3. XM_024450385.1XP_024306153.1  nuclear pore complex-interacting protein family member A2 isoform X3

    Conserved Domains (2) summary
    pfam06409
    Location:41240
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  4. XM_024450382.1XP_024306150.1  nuclear pore complex-interacting protein family member A2 isoform X1

    Conserved Domains (2) summary
    pfam06409
    Location:70269
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  5. XM_024450386.1XP_024306154.1  nuclear pore complex-interacting protein family member A2 isoform X3

    Related
    ENSP00000432029.1, ENST00000529166.5
    Conserved Domains (2) summary
    pfam06409
    Location:41240
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  6. XM_024450383.1XP_024306151.1  nuclear pore complex-interacting protein family member A2 isoform X1

    Conserved Domains (2) summary
    pfam06409
    Location:70269
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  7. XM_011522595.2XP_011520897.1  nuclear pore complex-interacting protein family member A2 isoform X8

    See identical proteins and their annotated locations for XP_011520897.1

    Conserved Domains (2) summary
    pfam06409
    Location:70266
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  8. XM_006720917.4XP_006720980.2  nuclear pore complex-interacting protein family member A2 isoform X7

    See identical proteins and their annotated locations for XP_006720980.2

    Conserved Domains (2) summary
    pfam06409
    Location:70262
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  9. XM_011522594.3XP_011520896.1  nuclear pore complex-interacting protein family member A2 isoform X7

    See identical proteins and their annotated locations for XP_011520896.1

    Conserved Domains (2) summary
    pfam06409
    Location:70262
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  10. XM_011522593.1XP_011520895.1  nuclear pore complex-interacting protein family member A2 isoform X7

    See identical proteins and their annotated locations for XP_011520895.1

    Conserved Domains (2) summary
    pfam06409
    Location:70262
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  11. XM_011522587.1XP_011520889.1  nuclear pore complex-interacting protein family member A2 isoform X6

    See identical proteins and their annotated locations for XP_011520889.1

    Related
    ENSP00000432767.1, ENST00000530328.5
    Conserved Domains (2) summary
    pfam06409
    Location:70263
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  12. XM_005255492.4XP_005255549.1  nuclear pore complex-interacting protein family member A2 isoform X10

    See identical proteins and their annotated locations for XP_005255549.1

    UniProtKB/TrEMBL
    O15103
    Conserved Domains (1) summary
    pfam06409
    Location:22214
    NPIP; Nuclear pore complex interacting protein (NPIP)
  13. XM_024450384.1XP_024306152.1  nuclear pore complex-interacting protein family member A2 isoform X2

    Conserved Domains (1) summary
    pfam06409
    Location:49248
    NPIP; Nuclear pore complex interacting protein (NPIP)
  14. XM_024450388.1XP_024306156.1  nuclear pore complex-interacting protein family member A2 isoform X5

    Conserved Domains (1) summary
    pfam06409
    Location:26225
    NPIP; Nuclear pore complex interacting protein (NPIP)
  15. XM_011522596.1XP_011520898.1  nuclear pore complex-interacting protein family member A2 isoform X9

    See identical proteins and their annotated locations for XP_011520898.1

    Conserved Domains (1) summary
    pfam06409
    Location:26245
    NPIP; Nuclear pore complex interacting protein (NPIP)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    717615..732294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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