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Ms4a4c membrane-spanning 4-domains, subfamily A, member 4C [ Mus musculus (house mouse) ]

Gene ID: 64380, updated on 16-Jul-2021

Summary

Official Symbol
Ms4a4cprovided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 4Cprovided by MGI
Primary source
MGI:MGI:1927656
See related
Ensembl:ENSMUSG00000024675
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ms4a9; AI449185; 5830413L19Rik
Expression
Biased expression in spleen adult (RPKM 3.3), mammary gland adult (RPKM 2.1) and 7 other tissues See more
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Genomic context

See Ms4a4c in Genome Data Viewer
Location:
19; 19 A
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11382081..11404610)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11404717..11427246)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11482151..11501736)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 7 Neighboring gene membrane-spanning 4-domains, subfamily A, member 4A Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane raft ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
membrane-spanning 4-domains, subfamily A, member 4C
Names
membrane-spanning 4-domains, subfamily A, member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029499.3NP_083775.1  membrane-spanning 4-domains, subfamily A, member 4C

    See identical proteins and their annotated locations for NP_083775.1

    Status: VALIDATED

    Source sequence(s)
    AC125406, AK151045
    Consensus CDS
    CCDS29599.1
    UniProtKB/TrEMBL
    Q9D3F6
    Related
    ENSMUSP00000072512.4, ENSMUST00000072729.10
    Conserved Domains (1) summary
    pfam04103
    Location:43171
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11382081..11404610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527250.2XP_006527313.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X1

    See identical proteins and their annotated locations for XP_006527313.1

    UniProtKB/TrEMBL
    Q9D3F6
    Conserved Domains (1) summary
    pfam04103
    Location:43171
    CD20; CD20-like family
  2. XM_006527251.4XP_006527314.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X1

    See identical proteins and their annotated locations for XP_006527314.1

    UniProtKB/TrEMBL
    Q9D3F6
    Related
    ENSMUSP00000113130.2, ENSMUST00000119366.2
    Conserved Domains (1) summary
    pfam04103
    Location:43171
    CD20; CD20-like family
  3. XM_017318270.2XP_017173759.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X2

    Conserved Domains (1) summary
    pfam04103
    Location:1076
    CD20; CD20-like family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_022429.1: Suppressed sequence

    Description
    NM_022429.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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