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LINC01128 long intergenic non-protein coding RNA 1128 [ Homo sapiens (human) ]

Gene ID: 643837, updated on 25-Jan-2022

Summary

Official Symbol
LINC01128provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1128provided by HGNC
Primary source
HGNC:HGNC:49377
See related
Ensembl:ENSG00000228794 AllianceGenome:HGNC:49377
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in heart (RPKM 8.4), fat (RPKM 5.1) and 25 other tissues See more
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Genomic context

See LINC01128 in Genome Data Viewer
Location:
1p36.33
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (827591..859446)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (762971..794826)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 87 member B Neighboring gene long intergenic non-protein coding RNA 115 Neighboring gene uncharacterized LOC107984850 Neighboring gene family with sequence similarity 41 member C Neighboring gene tubulin beta 8 class VIII pseudogene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047519.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL669831, BC102012, CN361275, DR005973
  2. NR_047521.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon compared to variant 1.
    Source sequence(s)
    AL669831, BC042880, CN361275
    Related
    ENST00000445118.7
  3. NR_047523.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two internal exons compared to variant 1.
    Source sequence(s)
    AL669831, CN361275, DA780029
  4. NR_047524.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks two consecutive internal exons compared to variant 1.
    Source sequence(s)
    AL669831, BC107481, CN361275
  5. NR_047525.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) uses an alternate 5'-most exon and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AL669831, DA223705
  6. NR_047526.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) lacks a large portion of the 3' region and uses an alternate terminal exon, compared to variant 1.
    Source sequence(s)
    AI051839, AL669831, BX095144, CN361275

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    827591..859446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_015368.2: Suppressed sequence

    Description
    NR_015368.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  2. NR_047520.1: Suppressed sequence

    Description
    NR_047520.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  3. NR_047522.1: Suppressed sequence

    Description
    NR_047522.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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