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LINC02315 long intergenic non-protein coding RNA 2315 [ Homo sapiens (human) ]

Gene ID: 644919, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02315provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2315provided by HGNC
Primary source
HGNC:HGNC:53234
See related
AllianceGenome:HGNC:53234
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (40954711..41141048)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (35145507..35331880)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (41423916..41610251)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370466 Neighboring gene MPRA-validated peak2137 silencer Neighboring gene uncharacterized LOC105370467 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41328024-41328794 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:41423413-41423986 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:41423987-41424559 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:41613785-41614285 Neighboring gene WD repeat domain 75 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:41872411-41873214 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41873331-41873866 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41974655-41975156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:41984914-41985504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:42009653-42010250 Neighboring gene LRFN5 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project. Oudot-Mellakh T, et al. Br J Haematol, 2012 Apr. PMID 22443383
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109757.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL390815, BX248273, CN418512

  2. NR_109758.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contain an alternate 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BX248273, CN274424

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    40954711..41141048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    35145507..35331880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases