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PLPPR2 phospholipid phosphatase related 2 [ Homo sapiens (human) ]

Gene ID: 64748, updated on 11-Apr-2024

Summary

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Official Symbol
PLPPR2provided by HGNC
Official Full Name
phospholipid phosphatase related 2provided by HGNC
Primary source
HGNC:HGNC:29566
See related
Ensembl:ENSG00000105520 MIM:619591; AllianceGenome:HGNC:29566
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRG4; LPPR2
Summary
Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in brain (RPKM 26.0), prostate (RPKM 12.8) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
19p13.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (11355432..11365698)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (11482410..11492670)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11466108..11476374)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene transmembrane protein 205 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11456465-11457295 Neighboring gene coiled-coil domain containing 159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11461146-11461646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11467020-11467961 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14012 Neighboring gene SWIM-type zinc finger 7 associated protein 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11492093-11492630 Neighboring gene erythropoietin receptor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Molecular cloning and expression regulation of PRG-3, a new member of the plasticity-related gene family. Savaskan NE, et al. Eur J Neurosci, 2004 Jan. PMID 14750979
  2. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Maruyama K, et al. Gene, 1994 Jan 28. PMID 8125298
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article
  5. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ13055, DKFZp761E1121

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phospholipid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
phospholipid phosphatase-related protein type 2
Names
inactive phospholipid phosphatase PLPPR2
lipid phosphate phosphatase-related protein type 2
plasticity related gene 4
plasticity-related gene 4 protein
NP_001164106.1
NP_001380821.1
NP_001380822.1
NP_001380823.1
NP_001380824.1
NP_001380825.1
NP_073574.2
XP_016882637.1
XP_054177753.1
XP_054177754.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170635.2 → NP_001164106.1  phospholipid phosphatase-related protein type 2 isoform 2

    See identical proteins and their annotated locations for NP_001164106.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting protein (isoform 2) has a distinct C-terminus and is longer than isoform 1.
    Source sequence(s)
    AK094869, BC009378, DB169285
    Consensus CDS
    CCDS59352.1
    UniProtKB/Swiss-Prot
    Q96GM1
    Related
    ENSP00000466898.1, ENST00000591608.2
    Conserved Domains (1) summary
    cd03384
    Location:100 → 256
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

  2. NM_001393892.1 → NP_001380821.1  phospholipid phosphatase-related protein type 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC024575
    Consensus CDS
    CCDS92519.1
    UniProtKB/TrEMBL
    A0A8I5KWF3
    Related
    ENSP00000510269.1, ENST00000688289.1
    Conserved Domains (1) summary
    cd03384
    Location:125 → 281
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

  3. NM_001393893.1 → NP_001380822.1  phospholipid phosphatase-related protein type 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC024575
    Consensus CDS
    CCDS92519.1
    UniProtKB/TrEMBL
    A0A8I5KWF3
    Conserved Domains (1) summary
    cd03384
    Location:125 → 281
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

  4. NM_001393894.1 → NP_001380823.1  phospholipid phosphatase-related protein type 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC024575
    Consensus CDS
    CCDS12258.1
    UniProtKB/Swiss-Prot
    Q5CZ76, Q8N1U4, Q96GM1, Q9H929
    Conserved Domains (1) summary
    cd03384
    Location:125 → 281
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

  5. NM_001393895.1 → NP_001380824.1  phospholipid phosphatase-related protein type 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC024575
    Conserved Domains (1) summary
    cd03384
    Location:100 → 256
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

  6. NM_001393896.1 → NP_001380825.1  phospholipid phosphatase-related protein type 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC024575

  7. NM_022737.3 → NP_073574.2  phospholipid phosphatase-related protein type 2 isoform 1

    See identical proteins and their annotated locations for NP_073574.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter isoform (1).
    Source sequence(s)
    AK023117, AY304516, BC009378
    Consensus CDS
    CCDS12258.1
    UniProtKB/Swiss-Prot
    Q5CZ76, Q8N1U4, Q96GM1, Q9H929
    Related
    ENSP00000251473.4, ENST00000251473.9
    Conserved Domains (1) summary
    cd03384
    Location:125 → 281
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    11355432..11365698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017027148.2 → XP_016882637.1  phospholipid phosphatase-related protein type 2 isoform X1

    UniProtKB/Swiss-Prot
    Q96GM1
    Conserved Domains (1) summary
    cd03384
    Location:100 → 256
    PAP2_wunen; PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the ...

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    11482410..11492670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054321778.1 → XP_054177753.1  phospholipid phosphatase-related protein type 2 isoform X1

  2. XM_054321779.1 → XP_054177754.1  phospholipid phosphatase-related protein type 2 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96GM1.1 GenPept UniProtKB/Swiss-Prot:Q96GM1

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