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spt4 transcription elongation factor subunit Spt4 [ Saccharolobus shibatae B12 ]

Gene ID: 65564494, updated on 25-Dec-2023

Summary

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Gene symbol
spt4
Gene description
transcription elongation factor subunit Spt4
Locus tag
J5U23_RS14635
Gene type
protein coding
Organism
Saccharolobus shibatae B12 (strain: B12, type-material: type strain of Sulfolobus shibatae)
Lineage
Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus
Old locus tag
J5U23_03021
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Genomic context

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NZ_CP077717.1Genomic Context describing neighboring genes Neighboring gene reverse gyrase Neighboring gene CDC48 family AAA ATPase Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene GTP-dependent dephospho-CoA kinase family protein Neighboring gene DNA-directed RNA polymerase Neighboring gene PIN domain-containing protein Neighboring gene translation initiation factor IF-2 subunit gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP077717.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A global analysis of transcription reveals two modes of Spt4/5 recruitment to archaeal RNA polymerase. Smollett K, et al. Nat Microbiol, 2017 Mar 1. PMID 28248297
  2. Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. Martinez-Rucobo FW, et al. EMBO J, 2011 Apr 6. PMID 21386817, Free PMC Article
  3. New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae. Medvedeva S, et al. Environ Microbiol, 2021 Aug. PMID 34190379

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
transcription elongation factor subunit Spt4
WP_012711669.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP077717.1 Reference assembly

    Range
    2726473..2726673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012711669.1 MULTISPECIES: transcription elongation factor subunit Spt4 [Sulfolobaceae]

    See identical proteins and their annotated locations for WP_012711669.1

    UniProtKB/TrEMBL
    A0A8F5BRR8, C3MR00, C3MWY8, C3MZ48, C3N768, C3NGG7, C4KIC6, D2PD32, F0NHR0, F0NPV4, M9UAB3
    Conserved Domains (1) summary
    COG2093
    Location:4 → 66
    Spt4; RNA polymerase subunit RPABC4/transcription elongation factor Spt4 [Transcription]
Nucleotide Protein
Heading Accession and Version