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tfe transcription factor E [ Saccharolobus shibatae B12 ]

Gene ID: 65564678, updated on 25-Dec-2023

Summary

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Gene symbol
tfe
Gene description
transcription factor E
Locus tag
J5U23_RS15555
Gene type
protein coding
Organism
Saccharolobus shibatae B12 (strain: B12, type-material: type strain of Sulfolobus shibatae)
Lineage
Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus
Old locus tag
J5U23_03200
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Genomic context

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NZ_CP077717.1Genomic Context describing neighboring genes Neighboring gene proteasome-activating nucleotidase Neighboring gene multiprotein bridging factor aMBF1 Neighboring gene GTPase HflX Neighboring gene tRNA methyltransferase Neighboring gene DNA cytosine methyltransferase Neighboring gene RecB-family nuclease Neighboring gene tRNA-Val

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP077717.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition. Bell SD, et al. EMBO Rep, 2001 Feb. PMID 11258705, Free PMC Article
  2. An extended winged helix domain in general transcription factor E/IIE alpha. Meinhart A, et al. J Biol Chem, 2003 Nov 28. PMID 13679366
  3. New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae. Medvedeva S, et al. Environ Microbiol, 2021 Aug. PMID 34190379

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
transcription factor E

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP077717.1 Reference assembly

    Range
    2872620..2873156
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012711838.1 MULTISPECIES: transcription factor E [Sulfolobaceae]

    See identical proteins and their annotated locations for WP_012711838.1

    UniProtKB/Swiss-Prot
    C3MRF5, C3MY51, C3MZJ0, C3N7L2, C4KIS0
    UniProtKB/TrEMBL
    A0A8F5BY42, A0A8F5GVE0, D2PDH6, F0NIK7, F0NKP5, M9UG10
    Conserved Domains (1) summary
    COG1675
    Location:2 → 177
    TFA1; Transcription initiation factor IIE, alpha subunit [Transcription]
Nucleotide Protein
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