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Ypel3 yippee like 3 [ Mus musculus (house mouse) ]

Gene ID: 66090, updated on 23-Jun-2021

Summary

Official Symbol
Ypel3provided by MGI
Official Full Name
yippee like 3provided by MGI
Primary source
MGI:MGI:1913340
See related
Ensembl:ENSMUSG00000042675
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
S; Suap; 0610043B10Rik; 1190001G19Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 190.6), mammary gland adult (RPKM 124.4) and 28 other tissues See more
Orthologs
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Genomic context

See Ypel3 in Genome Data Viewer
Location:
7; 7 F3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126376135..126379682)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126776963..126780510)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133920489..133924028)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 3 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 3 Neighboring gene T-box 6 Neighboring gene protein phosphatase 4, catalytic subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cellular senescence ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein yippee-like 3
Names
small ubiquitinated apoptotic protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001379293.1NP_001366222.1  protein yippee-like 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (a). Variants 1-5 all encode the same isoform (a).
    Source sequence(s)
    AC124505
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  2. NM_001379294.1NP_001366223.1  protein yippee-like 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variants 1-3 and 5, encodes the longer isoform (a).
    Source sequence(s)
    AC124505
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  3. NM_001379295.1NP_001366224.1  protein yippee-like 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variants 1-4, encodes the longer isoform (a).
    Source sequence(s)
    AC124505
    Related
    ENSMUSP00000101963.2, ENSMUST00000106356.2
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  4. NM_001379296.1NP_001366225.1  protein yippee-like 3 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6), as well as variant 7, encodes isoform b.
    Source sequence(s)
    AC124505
    Conserved Domains (1) summary
    cl13152
    Location:4881
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  5. NM_001379297.1NP_001366226.1  protein yippee-like 3 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variant 6, encodes isoform b.
    Source sequence(s)
    AC124505
    Conserved Domains (1) summary
    cl13152
    Location:4881
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  6. NM_025347.3NP_079623.1  protein yippee-like 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variants 1 and 3-5, encodes the longer isoform (a).
    Source sequence(s)
    AC124505
    Consensus CDS
    CCDS21842.1
    UniProtKB/Swiss-Prot
    P61237
    Related
    ENSMUSP00000037332.6, ENSMUST00000038614.12
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  7. NM_026875.3NP_081151.2  protein yippee-like 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1), as well as variants 2-5, encodes the longer isoform (a).
    Source sequence(s)
    AC124505
    Consensus CDS
    CCDS21842.1
    UniProtKB/Swiss-Prot
    P61237
    Related
    ENSMUSP00000128753.2, ENSMUST00000170882.8
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    126376135..126379682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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