U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Apoa5 apolipoprotein A-V [ Mus musculus (house mouse) ]

Gene ID: 66113, updated on 21-Apr-2024

Summary

Official Symbol
Apoa5provided by MGI
Official Full Name
apolipoprotein A-Vprovided by MGI
Primary source
MGI:MGI:1913363
See related
Ensembl:ENSMUSG00000032079 AllianceGenome:MGI:1913363
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RAP3; Apoav; 1300007O05Rik
Summary
Predicted to enable several functions, including cholesterol binding activity; enzyme activator activity; and heparin binding activity. Involved in acylglycerol homeostasis. Acts upstream of or within triglyceride metabolic process and triglyceride-rich lipoprotein particle remodeling. Predicted to be located in extracellular space. Predicted to be part of chylomicron; high-density lipoprotein particle; and very-low-density lipoprotein particle. Is expressed in lung. Human ortholog(s) of this gene implicated in cerebral infarction; coronary artery disease; familial hyperlipidemia (multiple); and type 2 diabetes mellitus. Orthologous to human APOA5 (apolipoprotein A5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward liver adult (RPKM 678.7) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
9 A5.2; 9 25.37 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (46179906..46183219)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (46268608..46271921)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein C-III Neighboring gene apolipoprotein A-IV Neighboring gene STARR-seq mESC enhancer starr_24024 Neighboring gene STARR-positive B cell enhancer ABC_E1112 Neighboring gene ZPR1 zinc finger Neighboring gene STARR-positive B cell enhancer ABC_E9758 Neighboring gene BUD13 homolog Neighboring gene STARR-seq mESC enhancer starr_24026

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cholesterol transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables enzyme activator activity ISO
Inferred from Sequence Orthology
more info
 
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables heparin binding ISO
Inferred from Sequence Orthology
more info
 
enables lipase activator activity ISO
Inferred from Sequence Orthology
more info
 
enables lipase binding ISO
Inferred from Sequence Orthology
more info
 
enables lipid binding ISO
Inferred from Sequence Orthology
more info
 
enables lipoprotein lipase activator activity ISO
Inferred from Sequence Orthology
more info
 
enables lipoprotein particle receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables low-density lipoprotein particle receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylcholine binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylcholine-sterol O-acyltransferase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phospholipid binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in acylglycerol homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in acylglycerol homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in acylglycerol homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in cholesterol efflux IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cholesterol homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in cholesterol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in lipid transport ISO
Inferred from Sequence Orthology
more info
 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in phospholipid efflux IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of fatty acid biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of lipid catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of lipoprotein lipase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of triglyceride catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of very-low-density lipoprotein particle remodeling ISO
Inferred from Sequence Orthology
more info
 
involved_in triglyceride catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in triglyceride homeostasis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within triglyceride metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in triglyceride metabolic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within triglyceride-rich lipoprotein particle remodeling IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
part_of chylomicron IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of chylomicron ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
is_active_in extracellular vesicle IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of high-density lipoprotein particle IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of high-density lipoprotein particle ISO
Inferred from Sequence Orthology
more info
 
part_of very-low-density lipoprotein particle IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of very-low-density lipoprotein particle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
apolipoprotein A-V
Names
apolipoprotein A5
regeneration-associated protein 3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348095.1NP_001335024.1  apolipoprotein A-V precursor

    Status: VALIDATED

    Source sequence(s)
    AC164105, AK050280
    Consensus CDS
    CCDS23143.1
    UniProtKB/Swiss-Prot
    Q8C7G5, Q91X90, Q99P64
    Related
    ENSMUSP00000113413.2, ENSMUST00000121598.8
    Conserved Domains (1) summary
    pfam01442
    Location:65242
    Apolipoprotein; Apolipoprotein A1/A4/E domain
  2. NM_080434.4NP_536682.2  apolipoprotein A-V precursor

    See identical proteins and their annotated locations for NP_536682.2

    Status: VALIDATED

    Source sequence(s)
    AC164105, AK050280
    Consensus CDS
    CCDS23143.1
    UniProtKB/Swiss-Prot
    Q8C7G5, Q91X90, Q99P64
    Related
    ENSMUSP00000034584.4, ENSMUST00000034584.4
    Conserved Domains (1) summary
    pfam01442
    Location:65242
    Apolipoprotein; Apolipoprotein A1/A4/E domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    46179906..46183219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)