Format

Send to:

Choose Destination

Cd302 CD302 antigen [ Mus musculus (house mouse) ]

Gene ID: 66205, updated on 3-Aug-2021

Summary

Official Symbol
Cd302provided by MGI
Official Full Name
CD302 antigenprovided by MGI
Primary source
MGI:MGI:1913455
See related
Ensembl:ENSMUSG00000060703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI159627; 1110055L24Rik
Expression
Broad expression in liver adult (RPKM 77.5), liver E18 (RPKM 52.7) and 18 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Cd302 in Genome Data Viewer
Location:
2; 2 C1.1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (60082337..60114828, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (60251993..60284484, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (60090050..60122475, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene bromodomain adjacent to zinc finger domain, 2B Neighboring gene lactate dehydrogenase A, pseudogene Neighboring gene membrane associated ring-CH-type finger 7 Neighboring gene ribosomal protein L10A, pseudogene 4 Neighboring gene lymphocyte antigen 75 Neighboring gene predicted gene 13571 Neighboring gene predicted gene 13580

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within phagocytosis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell cortex ISO
Inferred from Sequence Orthology
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in filopodium ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CD302 antigen
Names
C-type lectin domain family 13 member A
type I transmembrane C-type lectin receptor DCL-1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290660.1NP_001277589.1  CD302 antigen isoform a precursor

    See identical proteins and their annotated locations for NP_001277589.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AA222439, AI116405, AK002812
    Consensus CDS
    CCDS71058.1
    UniProtKB/Swiss-Prot
    Q9DCG2
    Related
    ENSMUSP00000074188.5, ENSMUST00000074606.11
    Conserved Domains (1) summary
    smart00034
    Location:22151
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
  2. NM_025422.4NP_079698.2  CD302 antigen isoform b precursor

    See identical proteins and their annotated locations for NP_079698.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
    Source sequence(s)
    AA222439, AI116405, AK004267
    Consensus CDS
    CCDS16058.1
    UniProtKB/Swiss-Prot
    Q9DCG2
    Related
    ENSMUSP00000028356.9, ENSMUST00000028356.9
    Conserved Domains (1) summary
    smart00034
    Location:22151
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    60082337..60114828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center