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1700020L24Rik RIKEN cDNA 1700020L24 gene [ Mus musculus (house mouse) ]

Gene ID: 66330, updated on 23-Jun-2021

Summary

Official Symbol
1700020L24Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700020L24 geneprovided by MGI
Primary source
MGI:MGI:1913580
See related
Ensembl:ENSMUSG00000035085
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 84.4), stomach adult (RPKM 17.2) and 9 other tissues See more
Orthologs
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Genomic context

See 1700020L24Rik in Genome Data Viewer
Location:
11; 11 C
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (83328520..83332058)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (83437694..83441232)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (83251196..83254734)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RAS-like, family 10, member B Neighboring gene growth arrest-specific 2 like 2 Neighboring gene matrix metallopeptidase 28 (epilysin) Neighboring gene TATA-box binding protein associated factor 15 Neighboring gene predicted gene, 32650 Neighboring gene HEAT repeat containing 9 Neighboring gene predicted gene, 23247

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C17orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025492.3NP_079768.2  uncharacterized protein C17orf50 homolog

    See identical proteins and their annotated locations for NP_079768.2

    Status: VALIDATED

    Source sequence(s)
    AK006174, BC152320
    Consensus CDS
    CCDS25165.1
    UniProtKB/Swiss-Prot
    Q8C1R3
    Related
    ENSMUSP00000042098.5, ENSMUST00000037378.6
    Conserved Domains (1) summary
    pfam15470
    Location:5169
    DUF4637; Domain of unknown function (DUF4637)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    83328520..83332058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156898.1XP_036012791.1  uncharacterized protein C17orf50 homolog isoform X1

    Conserved Domains (1) summary
    pfam15470
    Location:40202
    DUF4637; Domain of unknown function (DUF4637)
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