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Atp6v1c1 ATPase, H+ transporting, lysosomal V1 subunit C1 [ Mus musculus (house mouse) ]

Gene ID: 66335, updated on 22-Aug-2021

Summary

Official Symbol
Atp6v1c1provided by MGI
Official Full Name
ATPase, H+ transporting, lysosomal V1 subunit C1provided by MGI
Primary source
MGI:MGI:1913585
See related
Ensembl:ENSMUSG00000022295
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
U13839; 1700025B18Rik
Expression
Ubiquitous expression in cortex adult (RPKM 58.2), frontal lobe adult (RPKM 53.5) and 28 other tissues See more
Orthologs
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Genomic context

See Atp6v1c1 in Genome Data Viewer
Location:
15; 15 B3.1
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (38662096..38692688)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (38661904..38692444)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (38591659..38622199)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310043O21 gene Neighboring gene predicted gene, 41309 Neighboring gene siah E3 ubiquitin protein ligase 1, pseudogene 2 Neighboring gene predicted gene, 29697 Neighboring gene RIKEN cDNA 1100001I12 gene Neighboring gene predicted gene, 53877 Neighboring gene predicted gene, 45924 Neighboring gene predicted gene, 53229

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in apical part of cell ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
V-type proton ATPase subunit C 1
Names
ATPase, H+ transporting, V1 subunit C
V-ATPase subunit C 1
vacuolar proton pump subunit C 1
NP_079770.2
XP_036015431.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025494.3NP_079770.2  V-type proton ATPase subunit C 1

    See identical proteins and their annotated locations for NP_079770.2

    Status: VALIDATED

    Source sequence(s)
    AK151237, BB869068, BQ746792
    Consensus CDS
    CCDS27439.1
    UniProtKB/Swiss-Prot
    Q9Z1G3
    Related
    ENSMUSP00000022904.7, ENSMUST00000022904.8
    Conserved Domains (1) summary
    pfam03223
    Location:5370
    V-ATPase_C; V-ATPase subunit C

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    38662096..38692688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159538.1XP_036015431.1  V-type proton ATPase subunit C 1 isoform X1

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