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2410004B18Rik RIKEN cDNA 2410004B18 gene [ Mus musculus (house mouse) ]

Gene ID: 66421, updated on 23-Jun-2021

Summary

Official Symbol
2410004B18Rikprovided by MGI
Official Full Name
RIKEN cDNA 2410004B18 geneprovided by MGI
Primary source
MGI:MGI:1913671
See related
Ensembl:ENSMUSG00000036873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930572C24Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 15.2), CNS E14 (RPKM 12.3) and 28 other tissues See more
Orthologs
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Genomic context

See 2410004B18Rik in Genome Data Viewer
Location:
3; 3 H2
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (145643769..145650584)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (145938014..145944829)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (145600996..145607239)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene dimethylarginine dimethylaminohydrolase 1 Neighboring gene ribosomal protein L36A, pseudogene 2 Neighboring gene predicted gene, 35187 Neighboring gene B cell leukemia/lymphoma 10 Neighboring gene VISTA enhancer mm311 Neighboring gene predicted gene, 35352 Neighboring gene synapse defective 1, Rho GTPase, homolog 2 (C. elegans)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC144272

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
UPF0690 protein C1orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356284.1NP_001343213.1  UPF0690 protein C1orf52 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC123684
    Conserved Domains (1) summary
    pfam15559
    Location:33125
    DUF4660; Domain of unknown function (DUF4660)
  2. NM_025555.5NP_079831.1  UPF0690 protein C1orf52 homolog isoform 1

    See identical proteins and their annotated locations for NP_079831.1

    Status: VALIDATED

    Source sequence(s)
    AC123684
    Consensus CDS
    CCDS17898.1
    UniProtKB/Swiss-Prot
    Q9CWU4
    Related
    ENSMUSP00000045376.8, ENSMUST00000039571.14
    Conserved Domains (1) summary
    pfam15559
    Location:33125
    DUF4660; Domain of unknown function (DUF4660)

RNA

  1. NR_151445.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC123684, AK077565
    Related
    ENSMUST00000134575.8
  2. NR_151446.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC123684, AW124724

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    145643769..145650584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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