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Rpl15 ribosomal protein L15 [ Mus musculus (house mouse) ]

Gene ID: 66480, updated on 23-Jun-2021

Summary

Official Symbol
Rpl15provided by MGI
Official Full Name
ribosomal protein L15provided by MGI
Primary source
MGI:MGI:1913730
See related
Ensembl:ENSMUSG00000012405
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510008H07Rik
Expression
Ubiquitous expression in liver E14 (RPKM 213.0), CNS E11.5 (RPKM 200.6) and 28 other tissues See more
Orthologs
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Genomic context

See Rpl15 in Genome Data Viewer
Location:
14 A1; 14
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (4198710..4201873)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (18267823..18270986, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (19100337..19103500, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2E 1 Neighboring gene predicted gene, 41098 Neighboring gene NFKB inhibitor interacting Ras-like protein 1 Neighboring gene predicted gene 7084 Neighboring gene nuclear receptor subfamily 1, group D, member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC107261

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in A band ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359897.1NP_001346826.1  60S ribosomal protein L15

    Status: VALIDATED

    Source sequence(s)
    AK168807, BU757479, BY169862, CJ093984, CU024892, CX218985
    Consensus CDS
    CCDS36812.1
    Related
    ENSMUSP00000078388.5, ENSMUST00000079419.12
    Conserved Domains (1) summary
    pfam00827
    Location:2191
    Ribosomal_L15e; Ribosomal L15
  2. NM_001359899.1NP_001346828.1  60S ribosomal protein L15

    Status: VALIDATED

    Source sequence(s)
    AK168807, BU757479, BY169862, CU024892, CX218985
    Consensus CDS
    CCDS36812.1
    Related
    ENSMUSP00000098362.3, ENSMUST00000100799.9
    Conserved Domains (1) summary
    pfam00827
    Location:2191
    Ribosomal_L15e; Ribosomal L15
  3. NM_025586.3NP_079862.1  60S ribosomal protein L15

    See identical proteins and their annotated locations for NP_079862.1

    Status: VALIDATED

    Source sequence(s)
    AK168807, AW491775, BC087917
    Consensus CDS
    CCDS36812.1
    UniProtKB/Swiss-Prot
    Q9CZM2
    UniProtKB/TrEMBL
    Q5M8Q0
    Related
    ENSMUSP00000079163.8, ENSMUST00000080281.14
    Conserved Domains (1) summary
    pfam00827
    Location:2191
    Ribosomal_L15e; Ribosomal L15

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    4198710..4201873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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