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Gm7609 predicted pseudogene 7609 [ Mus musculus (house mouse) ]

Gene ID: 665378, updated on 6-May-2021

Summary

Official Symbol
Gm7609provided by MGI
Official Full Name
predicted pseudogene 7609provided by MGI
Primary source
MGI:MGI:3644536
See related
Ensembl:ENSMUSG00000079457
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG665378
Summary
This gene is one of several duplicated genes in a repeat cluster in the homogeneously staining region (HSR) of chromosome 1. It is an Sp100-rs gene copy, which arose by duplication following the fusion of the Csprs (component of Sp100-rs) gene and the 5' part of the Sp100 (nuclear antigen Sp100) gene. The coding sequence of this gene is intact compared to that of the Csprs gene, and therefore NCBI represents this as a protein-coding gene. However, it is also possible to interpret this fusion gene as a pseudogene of the Sp100 gene. It is unknown if this gene produces a protein in vivo. [provided by RefSeq, Mar 2011]
Expression
Biased expression in spleen adult (RPKM 1.7), thymus adult (RPKM 1.4) and 13 other tissues See more
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Genomic context

See Gm7609 in Genome Data Viewer
Location:
1; 1 C5
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85177313..85193119)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85199592..85215398)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (85196186..85210347)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A530040E14 gene Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene predicted gene, 38510 Neighboring gene nuclear body protein SP140-like protein Neighboring gene uncharacterized LOC118567761 Neighboring gene RIKEN cDNA C130026I21 gene Neighboring gene sp110 nuclear body protein-like Neighboring gene sp110 nuclear body protein-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081746.1NP_001075215.1  component of Sp100-rs-like

    See identical proteins and their annotated locations for NP_001075215.1

    Status: VALIDATED

    Source sequence(s)
    AC123856, AC164544
    Related
    ENSMUSP00000159200.2, ENSMUST00000113402.4
    Conserved Domains (1) summary
    pfam00001
    Location:106241
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85177313..85193119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496523.3XP_006496586.1  component of Sp100-rs-like isoform X2

    See identical proteins and their annotated locations for XP_006496586.1

    Conserved Domains (1) summary
    pfam00001
    Location:106241
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  2. XM_006496521.3XP_006496584.1  component of Sp100-rs-like isoform X1

    Conserved Domains (2) summary
    pfam00001
    Location:142277
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    pfam03172
    Location:129
    HSR; HSR domain
  3. XM_006496524.3XP_006496587.1  component of Sp100-rs-like isoform X2

    See identical proteins and their annotated locations for XP_006496587.1

    Conserved Domains (1) summary
    pfam00001
    Location:106241
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  4. XM_006496522.5XP_006496585.1  component of Sp100-rs-like isoform X2

    See identical proteins and their annotated locations for XP_006496585.1

    Conserved Domains (1) summary
    pfam00001
    Location:106241
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  5. XM_006496525.5XP_006496588.1  component of Sp100-rs-like isoform X2

    See identical proteins and their annotated locations for XP_006496588.1

    Conserved Domains (1) summary
    pfam00001
    Location:106241
    7tm_1; 7 transmembrane receptor (rhodopsin family)
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