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Fam107b family with sequence similarity 107, member B [ Mus musculus (house mouse) ]

Gene ID: 66540, updated on 23-Jun-2021

Summary

Official Symbol
Fam107bprovided by MGI
Official Full Name
family with sequence similarity 107, member Bprovided by MGI
Primary source
MGI:MGI:1913790
See related
Ensembl:ENSMUSG00000026655
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA589595; AA959793; AI132312; 3110001A13Rik
Expression
Ubiquitous expression in thymus adult (RPKM 16.4), testis adult (RPKM 14.5) and 28 other tissues See more
Orthologs
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Genomic context

See Fam107b in Genome Data Viewer
Location:
2; 2 A1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (3705849..3783179)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (3704812..3782142)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (3630730..3699406)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 50615 Neighboring gene presenilin associated, rhomboid-like pseudogene Neighboring gene predicted gene, 36031 Neighboring gene FERM domain containing 4A Neighboring gene polypyrimidine tract-binding protein 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within sensory perception of sound IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM107B
Names
novel DUF1151 domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025626.4NP_079902.1  protein FAM107B

    See identical proteins and their annotated locations for NP_079902.1

    Status: PROVISIONAL

    Source sequence(s)
    AK032875
    Consensus CDS
    CCDS15655.1
    UniProtKB/Swiss-Prot
    Q3TGF2
    Related
    ENSMUSP00000027965.5, ENSMUST00000027965.11
    Conserved Domains (1) summary
    pfam06625
    Location:8120
    DUF1151; Protein of unknown function (DUF1151)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    3705849..3783179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006497518.1XP_006497581.1  protein FAM107B isoform X1

    Conserved Domains (1) summary
    pfam06625
    Location:61172
    DUF1151; Protein of unknown function (DUF1151)
  2. XM_011238984.4XP_011237286.1  protein FAM107B isoform X4

    Conserved Domains (1) summary
    pfam06625
    Location:33144
    DUF1151; Protein of unknown function (DUF1151)
  3. XM_006497519.4XP_006497582.1  protein FAM107B isoform X2

    Conserved Domains (1) summary
    pfam06625
    Location:39150
    DUF1151; Protein of unknown function (DUF1151)
  4. XM_006497520.4XP_006497583.1  protein FAM107B isoform X3

    Related
    ENSMUSP00000110704.3, ENSMUST00000115052.9
    Conserved Domains (1) summary
    pfam06625
    Location:37148
    DUF1151; Protein of unknown function (DUF1151)
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