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Oip5os1 Opa interacting protein 5, opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 66602, updated on 23-Jun-2021

Summary

Official Symbol
Oip5os1provided by MGI
Official Full Name
Opa interacting protein 5, opposite strand 1provided by MGI
Primary source
MGI:MGI:1913852
See related
Ensembl:ENSMUSG00000085438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cy; Oi; lin; Cyrano; Oip5as1; AI451541; AI585852; AW538376; AW558897; linc-oip5; 1190006L01Rik; 1700020I14Rik; 4933437I03Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 14.6), heart adult (RPKM 11.0) and 27 other tissues See more
Orthologs
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Genomic context

See Oip5os1 in Genome Data Viewer
Location:
2; 2 E5
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (119424777..119431227)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (119594296..119600746)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (119420032..119426482)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 33412 Neighboring gene exonuclease 3'-5' domain containing 1 Neighboring gene calcineurin-like EF hand protein 1 Neighboring gene Opa interacting protein 5 Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene nuclear encoded rRNA 5S 204

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015473.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI841061, AK006166, AK017100
  2. NR_027832.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternative donor splice site at an internal coding exon, and thus is shorter than variant 1.
    Source sequence(s)
    AI841061, AK017100
    Related
    ENSMUST00000147425.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    119424777..119431227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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