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Ms4a4d membrane-spanning 4-domains, subfamily A, member 4D [ Mus musculus (house mouse) ]

Gene ID: 66607, updated on 23-Jun-2021

Summary

Official Symbol
Ms4a4dprovided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 4Dprovided by MGI
Primary source
MGI:MGI:1913857
See related
Ensembl:ENSMUSG00000024678
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210417J23Rik
Expression
Broad expression in bladder adult (RPKM 17.0), lung adult (RPKM 14.6) and 15 other tissues See more
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Genomic context

See Ms4a4d in Genome Data Viewer
Location:
19; 19 A
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11514158..11535830)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11536794..11558466)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11611339..11632956)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene 8369 Neighboring gene membrane-spanning 4-domains, subfamily A, member 6B Neighboring gene membrane-spanning 4-domains subfamily A member 6D-like Neighboring gene membrane-spanning 4-domains, subfamily A, member 6D

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane raft ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 4D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025658.5NP_079934.2  membrane-spanning 4-domains subfamily A member 4D

    See identical proteins and their annotated locations for NP_079934.2

    Status: VALIDATED

    Source sequence(s)
    AC165168
    Consensus CDS
    CCDS29602.1
    UniProtKB/Swiss-Prot
    Q99N05
    Related
    ENSMUSP00000025581.7, ENSMUST00000025581.7
    Conserved Domains (1) summary
    pfam04103
    Location:43170
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11514158..11535830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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