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Ms4a4a membrane-spanning 4-domains, subfamily A, member 4A [ Mus musculus (house mouse) ]

Gene ID: 666907, updated on 23-Jun-2021

Summary

Official Symbol
Ms4a4aprovided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 4Aprovided by MGI
Primary source
MGI:MGI:3643932
See related
Ensembl:ENSMUSG00000101389
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG666907
Expression
Broad expression in large intestine adult (RPKM 1.3), bladder adult (RPKM 1.3) and 23 other tissues See more
Orthologs
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Genomic context

See Ms4a4a in Genome Data Viewer
Location:
19; 19 A
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11352827..11370682)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11375488..11392915)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11450013..11467280)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 14 Neighboring gene membrane-spanning 4-domains, subfamily A, member 7 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4C Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane raft ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310331.1NP_001297260.1  membrane-spanning 4-domains subfamily A member 4A

    Status: VALIDATED

    Source sequence(s)
    AC125406
    Consensus CDS
    CCDS79692.1
    UniProtKB/TrEMBL
    A0A087WRT7
    Related
    ENSMUSP00000140768.2, ENSMUST00000188995.2
    Conserved Domains (1) summary
    pfam04103
    Location:46188
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11352827..11370682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161653.1XP_036017546.1  membrane-spanning 4-domains subfamily A member 4A isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:4691
    CD20; CD20-like family
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