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BC023105 cDNA sequence BC023105 [ Mus musculus (house mouse) ]

Gene ID: 667597, updated on 8-Feb-2024

Summary

Official Symbol
BC023105provided by MGI
Official Full Name
cDNA sequence BC023105provided by MGI
Gene description
interferon-inducible GTPase-like pseudogene
Primary source
MGI:MGI:2384767
See related
AllianceGenome:MGI:2384767
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
18 D3; 18 34.36 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (60572466..60576925)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (60438431..60443320)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene interferon inducible GTPase 1 Neighboring gene predicted pseudogene 6960 Neighboring gene STARR-positive B cell enhancer mm9_chr18:60622203-60622504 Neighboring gene STARR-seq mESC enhancer starr_44715 Neighboring gene small integral membrane protein 3 Neighboring gene predicted gene, 46628

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183071.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC151990
  2. NR_183072.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC151990

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    60572466..60576925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001040201.1: Suppressed sequence

    Description
    NM_001040201.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_145357.1: Suppressed sequence

    Description
    NM_145357.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.