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1700010I14Rik RIKEN cDNA 1700010I14 gene [ Mus musculus (house mouse) ]

Gene ID: 66931, updated on 5-Mar-2024

Summary

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Official Symbol
1700010I14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700010I14 geneprovided by MGI
Primary source
MGI:MGI:1914181
See related
Ensembl:ENSMUSG00000023873 AllianceGenome:MGI:1914181
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in ileum; male reproductive gland or organ; and midbrain. Orthologous to human C6orf118 (chromosome 6 open reading frame 118). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 80.5) See more
Orthologs
human all
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Genomic context

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Location:
17 A1; 17 5.53 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (9207152..9227151)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (8988320..9008319)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 10A Neighboring gene STARR-seq mESC enhancer starr_41770 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:8993464-8993573 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene predicted gene, 34321 Neighboring gene STARR-seq mESC enhancer starr_41771 Neighboring gene STARR-positive B cell enhancer ABC_E314 Neighboring gene STARR-seq mESC enhancer starr_41772 Neighboring gene RIKEN cDNA 6530411M01 gene Neighboring gene STARR-seq mESC enhancer starr_41773 Neighboring gene predicted gene, 29711 Neighboring gene predicted gene, 52287

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice. Kaneda Y, et al. Andrology, 2023 Jul. PMID 36598146,
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  4. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice.
    Title: Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1)  1 citation

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C6orf118 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347544.1 → NP_001334473.1  uncharacterized protein C6orf118 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122893, AK005830, AK161278, AV257018
    Consensus CDS
    CCDS84275.1
    UniProtKB/TrEMBL
    Q7TPG0, Q9DAH6
    Related
    ENSMUSP00000024650.6, ENSMUST00000024650.12

  2. NM_025851.3 → NP_080127.2  uncharacterized protein C6orf118 homolog isoform 1

    See identical proteins and their annotated locations for NP_080127.2

    Status: VALIDATED

    Source sequence(s)
    AC122893, AK006307, AV257018, BC050753
    Consensus CDS
    CCDS28385.2
    UniProtKB/TrEMBL
    A0A3B2W887, Q3TTN6
    Related
    ENSMUSP00000118841.2, ENSMUST00000151609.2
    Conserved Domains (3) summary
    pfam14235
    Location:351 → 418
    DUF4337; Domain of unknown function (DUF4337)
    pfam15739
    Location:242 → 344
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
    cl17173
    Location:431 → 482
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    9207152..9227151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939569.1 RNA Sequence

  2. XR_003952172.1 RNA Sequence

  3. XR_004939570.1 RNA Sequence

  4. XR_876377.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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