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Pgap4 post-GPI attachment to proteins GalNAc transferase 4 [ Mus musculus (house mouse) ]

Gene ID: 67063, updated on 23-Jun-2021

Summary

Official Symbol
Pgap4provided by MGI
Official Full Name
post-GPI attachment to proteins GalNAc transferase 4provided by MGI
Primary source
MGI:MGI:1914313
See related
Ensembl:ENSMUSG00000039611
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tmem246; AI835809; 2810432L12Rik; 9330170P15Rik
Expression
Ubiquitous expression in stomach adult (RPKM 29.0), colon adult (RPKM 23.9) and 25 other tissues See more
Orthologs
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Genomic context

See Pgap4 in Genome Data Viewer
Location:
4; 4 B1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (49584506..49597876, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (49584506..49597876, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (49597378..49610742, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 189 Neighboring gene aldolase B, fructose-bisphosphate Neighboring gene predicted gene, 33106 Neighboring gene predicted gene, 33159 Neighboring gene predicted gene, 45952

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables glycosyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in GPI anchor biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
post-GPI attachment to proteins factor 4
Names
transmembrane protein 246
transmembrane protein C9orf125 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355503.1NP_001342432.1  post-GPI attachment to proteins factor 4

    Status: VALIDATED

    Source sequence(s)
    AK042679, AK045523, AL772310, CK626914, CX238824
    Consensus CDS
    CCDS18177.1
    Conserved Domains (1) summary
    cd22190
    Location:25395
    PGAP4; Post-GPI attachment to proteins factor 4
  2. NM_025944.4NP_080220.2  post-GPI attachment to proteins factor 4

    See identical proteins and their annotated locations for NP_080220.2

    Status: VALIDATED

    Source sequence(s)
    AK042679, AK045523
    Consensus CDS
    CCDS18177.1
    UniProtKB/Swiss-Prot
    Q91YV9
    Related
    ENSMUSP00000040885.3, ENSMUST00000042750.3
    Conserved Domains (1) summary
    cd22190
    Location:25395
    PGAP4; Post-GPI attachment to proteins factor 4

RNA

  1. NR_149725.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK042679, AK045523, AL772310, CK626914, CX238824

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    49584506..49597876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538195.4XP_006538258.1  post-GPI attachment to proteins factor 4 isoform X1

    See identical proteins and their annotated locations for XP_006538258.1

    UniProtKB/Swiss-Prot
    Q91YV9
    Conserved Domains (1) summary
    cd22190
    Location:25395
    PGAP4; Post-GPI attachment to proteins factor 4
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