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Lce1a1 late cornified envelope 1A1 [ Mus musculus (house mouse) ]

Gene ID: 67127, updated on 8-Feb-2024

Summary

Official Symbol
Lce1a1provided by MGI
Official Full Name
late cornified envelope 1A1provided by MGI
Primary source
MGI:MGI:1914377
See related
Ensembl:ENSMUSG00000057609 AllianceGenome:MGI:1914377
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sprrl3; 2200008B06Rik
Expression
Restricted expression toward stomach adult (RPKM 124.3) See more
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Genomic context

Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92553839..92555614, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92646532..92648307, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35639 Neighboring gene late cornified envelope 6A Neighboring gene predicted gene, 35699 Neighboring gene late cornified envelope 1B Neighboring gene ribosomal protein L13, pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General protein information

Preferred Names
late cornified envelope 1A1
Names
small proline rich-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025984.2NP_080260.1  late cornified envelope 1A1

    See identical proteins and their annotated locations for NP_080260.1

    Status: VALIDATED

    Source sequence(s)
    AA755466, AK008643
    Consensus CDS
    CCDS17562.1
    UniProtKB/TrEMBL
    Q9CQH5
    Related
    ENSMUSP00000073776.6, ENSMUST00000074142.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92553839..92555614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)