Format

Send to:

Choose Destination

Ankrd33b ankyrin repeat domain 33B [ Mus musculus (house mouse) ]

Gene ID: 67434, updated on 23-Jun-2021

Summary

Official Symbol
Ankrd33bprovided by MGI
Official Full Name
ankyrin repeat domain 33Bprovided by MGI
Primary source
MGI:MGI:1917904
See related
Ensembl:ENSMUSG00000022237
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
0610012A05Rik; 3021401C12Rik; 5730557B15Rik
Expression
Biased expression in lung adult (RPKM 10.0), cortex adult (RPKM 6.8) and 9 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Ankrd33b in Genome Data Viewer
Location:
15; 15 B2
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (31278328..31370446, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (31291479..31367802, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (31221234..31297514, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene death-associated protein Neighboring gene predicted gene, 41285 Neighboring gene family with sequence similarity 136, member B, pseudogene Neighboring gene predicted gene, 41286 Neighboring gene ropporin 1-like Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat domain-containing protein 33B

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164441.1NP_001157913.1  ankyrin repeat domain-containing protein 33B isoform 3

    See identical proteins and their annotated locations for NP_001157913.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
    Source sequence(s)
    AC115735, AC123917
    Consensus CDS
    CCDS49589.1
    UniProtKB/Swiss-Prot
    Q3U0L2
    Related
    ENSMUSP00000118984.2, ENSMUST00000123325.9
    Conserved Domains (4) summary
    cd00204
    Location:112239
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:121216
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:83136
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:116148
    ANK; ANK repeat [structural motif]
  2. NM_001357922.1NP_001344851.1  ankyrin repeat domain-containing protein 33B isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate in-frame exon in the 5' coding region and uses a downstream start codon compared to variant 1. It encodes isoform 4 which has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC115735, AC123917
    Conserved Domains (1) summary
    cd00204
    Location:149
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
  3. NM_001357923.1NP_001344852.1  ankyrin repeat domain-containing protein 33B isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 5, which is shorter than isoform 1.
    Source sequence(s)
    AC115735, AC123917
    Conserved Domains (2) summary
    cd00204
    Location:24101
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:4778
    ANK; ANK repeat [structural motif]
  4. NM_026153.3NP_080429.1  ankyrin repeat domain-containing protein 33B isoform 1

    See identical proteins and their annotated locations for NP_080429.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) uses an alternate splice pattern in the 3' coding region and 3' UTR, compared to variant 3. The resulting isoform (1) has a shorter and distinct C-terminus, compared to isoform 3.
    Source sequence(s)
    AC123917, AK012871, BC100327
    Consensus CDS
    CCDS27409.1
    UniProtKB/Swiss-Prot
    Q3U0L2
    Related
    ENSMUSP00000076209.5, ENSMUST00000076942.5
  5. NM_027496.3NP_081772.1  ankyrin repeat domain-containing protein 33B isoform 2

    See identical proteins and their annotated locations for NP_081772.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 3. The resulting isoform (2) lacks an internal segment near the N-terminus, compared to isoform 3.
    Source sequence(s)
    AC123917, AK017844, BC100327
    Consensus CDS
    CCDS27408.1
    UniProtKB/Swiss-Prot
    Q3U0L2
    Related
    ENSMUSP00000106040.3, ENSMUST00000110410.10
    Conserved Domains (3) summary
    cd00204
    Location:109230
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:112207
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:107139
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    31278328..31370446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159549.1XP_036015442.1  ankyrin repeat domain-containing protein 33B isoform X1

    Conserved Domains (3) summary
    sd00045
    Location:85114
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:84136
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:121209
    Ank_2; Ankyrin repeats (3 copies)
  2. XM_006520155.5XP_006520218.1  ankyrin repeat domain-containing protein 33B isoform X2

    Conserved Domains (2) summary
    sd00045
    Location:85114
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85160
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_004938864.1 RNA Sequence

Support Center