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Plxdc2 plexin domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 67448, updated on 16-Oct-2021

Summary

Official Symbol
Plxdc2provided by MGI
Official Full Name
plexin domain containing 2provided by MGI
Primary source
MGI:MGI:1914698
See related
Ensembl:ENSMUSG00000026748
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tem7r; AI646728; AU022916; AV231634; 1200007L24Rik; 5430431D22Rik
Expression
Broad expression in bladder adult (RPKM 9.4), lung adult (RPKM 7.0) and 16 other tissues See more
Orthologs
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Genomic context

See Plxdc2 in Genome Data Viewer
Location:
2; 2 A2- A3
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (16360551..16765941)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (16355740..16761132)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (16277949..16673742)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene MAM and LDL receptor class A domain containing 1 Neighboring gene Hmgb1 pseudogene Neighboring gene myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 Neighboring gene RIKEN cDNA 4930515L03 gene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 54103

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
plexin domain-containing protein 2
Names
tumor endothelial marker 7 related
tumor endothelial marker 7-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026162.6NP_080438.2  plexin domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_080438.2

    Status: VALIDATED

    Source sequence(s)
    AK035165, AL928882, AW045408
    Consensus CDS
    CCDS15705.1
    UniProtKB/Swiss-Prot
    Q9DC11
    Related
    ENSMUSP00000028081.7, ENSMUST00000028081.13
    Conserved Domains (2) summary
    pfam01437
    Location:327372
    PSI; Plexin repeat
    cl02648
    Location:191282
    NIDO; Nidogen-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    16360551..16765941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006497531.4XP_006497594.1  plexin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    B1AY85
    Related
    ENSMUSP00000110350.2, ENSMUST00000114702.2
    Conserved Domains (2) summary
    pfam01437
    Location:327372
    PSI; Plexin repeat
    cl02648
    Location:191282
    NIDO; Nidogen-like
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