Gpatch1 G patch domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gpatch1provided by MGI
Official Full Name: G patch domain containing 1provided by MGI
Primary source: MGI:MGI:1914721
See related: Ensembl:ENSMUSG00000063808 AllianceGenome:MGI:1914721
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: ECGP; Gpatc1; 1300003A17Rik
Summary: Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in CNS E18 (RPKM 5.4), CNS E11.5 (RPKM 5.2) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 7 B2; 7 21.27 cM

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (34975969..35017865, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (35238912..35318748, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (3)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Gpatch1 (e-PCR), detects polymorphism
- UniSTS:479116

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: G patch domain-containing protein 1

Names: evolutionarily conserved G-patch domain containing

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_026181.1 → NP_080457.1 G patch domain-containing protein 1

See identical proteins and their annotated locations for NP_080457.1

Status: PROVISIONAL

Source sequence(s)

AK004868

Consensus CDS

CCDS21147.1

UniProtKB/Swiss-Prot

Q8R0V4, Q9DBM1

UniProtKB/TrEMBL

D6RET6

Related

ENSMUSP00000078632.6, ENSMUST00000079693.12

Conserved Domains (2) summary

pfam01585
Location:154 → 172

G-patch; G-patch domain

pfam07713
Location:31 → 116

DUF1604; Protein of unknown function (DUF1604)