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Tmed9 transmembrane p24 trafficking protein 9 [ Mus musculus (house mouse) ]

Gene ID: 67511, updated on 23-Jun-2021

Summary

Official Symbol
Tmed9provided by MGI
Official Full Name
transmembrane p24 trafficking protein 9provided by MGI
Primary source
MGI:MGI:1914761
See related
Ensembl:ENSMUSG00000058569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
p24a; 2400003B06Rik
Expression
Ubiquitous expression in placenta adult (RPKM 76.5), limb E14.5 (RPKM 60.5) and 28 other tissues See more
Orthologs
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Genomic context

See Tmed9 in Genome Data Viewer
Location:
13; 13 B1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (55740948..55745510)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (55593135..55597697)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (55694496..55699058)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46416 Neighboring gene family with sequence similarity 193, member B Neighboring gene predicted gene, 31364 Neighboring gene xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) Neighboring gene calcium modulating ligand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables syntaxin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in COPI coating of Golgi vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in COPI coating of Golgi vesicle ISO
Inferred from Sequence Orthology
more info
 
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in Golgi organization ISO
Inferred from Sequence Orthology
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of organelle organization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in COPII-coated ER to Golgi transport vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum-Golgi intermediate compartment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synaptic vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
transmembrane emp24 domain-containing protein 9
Names
glycoprotein 25L2
p24 family protein alpha-2
p24alpha2
transmembrane emp24 protein transport domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026211.3NP_080487.2  transmembrane emp24 domain-containing protein 9 precursor

    See identical proteins and their annotated locations for NP_080487.2

    Status: VALIDATED

    Source sequence(s)
    AK010259, BY334399, CF382327
    Consensus CDS
    CCDS49277.1
    UniProtKB/Swiss-Prot
    Q99KF1
    UniProtKB/TrEMBL
    Q6PDC2
    Related
    ENSMUSP00000105531.4, ENSMUST00000109905.5
    Conserved Domains (1) summary
    pfam01105
    Location:37230
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    55740948..55745510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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