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4930523C07Rik RIKEN cDNA 4930523C07 gene [ Mus musculus (house mouse) ]

Gene ID: 67647, updated on 5-Mar-2024

Summary

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Official Symbol
4930523C07Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930523C07 geneprovided by MGI
Primary source
MGI:MGI:1914897
See related
Ensembl:ENSMUSG00000090394 AllianceGenome:MGI:1914897
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human KIAA0040 (KIAA0040). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 10.0), lung adult (RPKM 8.8) and 22 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 H2.1; 1 69.32 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (159871950..159906157)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (160044380..160078587)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31493 Neighboring gene predicted gene, 31667 Neighboring gene STARR-positive B cell enhancer ABC_E11694 Neighboring gene STARR-positive B cell enhancer ABC_E8778 Neighboring gene STARR-positive B cell enhancer ABC_E9489 Neighboring gene predicted gene, 37294 Neighboring gene RIKEN cDNA 4930562F07 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:162009351-162009552 Neighboring gene tenascin N Neighboring gene predicted gene, 53640 Neighboring gene STARR-seq mESC enhancer starr_02794 Neighboring gene mitochondrial ribosomal protein S14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein KIAA0040 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162896.1 → NP_001156368.1  uncharacterized protein KIAA0040 homolog

    See identical proteins and their annotated locations for NP_001156368.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the conserved protein.
    Source sequence(s)
    AC154873, AK028922
    Consensus CDS
    CCDS48410.1
    UniProtKB/TrEMBL
    E9Q2T4
    Related
    ENSMUSP00000156718.2, ENSMUST00000163892.8

RNA

  1. NR_028111.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' exon, compared to variant 1. This variant is represented as non-coding because it lacks the coding region found in variant 1.
    Source sequence(s)
    AC154873, AK041441
    Related
    ENSMUST00000060298.15

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    159871950..159906157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496968.3 → XP_006497031.1  uncharacterized protein KIAA0040 homolog isoform X1

    See identical proteins and their annotated locations for XP_006497031.1

    UniProtKB/TrEMBL
    E9Q2T4
    Related
    ENSMUSP00000137410.2, ENSMUST00000097513.4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001024470.1: Suppressed sequence

    Description
    NM_001024470.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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