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Tex46 testis expressed 46 [ Mus musculus (house mouse) ]

Gene ID: 67663, updated on 5-Mar-2024

Summary

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Official Symbol
Tex46provided by MGI
Official Full Name
testis expressed 46provided by MGI
Primary source
MGI:MGI:1914913
See related
Ensembl:ENSMUSG00000036921 AllianceGenome:MGI:1914913
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930549C01Rik
Summary
Orthologous to human TEX46 (testis expressed 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 11.3) See more
Orthologs
human all
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Genomic context

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See Tex46 in Genome Data Viewer
Location:
4 D3; 4 68.92 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (136334313..136340590)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (136607091..136613279)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1D Neighboring gene leucine zipper protein 1 Neighboring gene lysine (K)-specific demethylase 1A Neighboring gene STARR-positive B cell enhancer ABC_E6238 Neighboring gene STARR-positive B cell enhancer mm9_chr4:136177240-136177540 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene lactamase, beta-like 1 Neighboring gene Eph receptor B2 Neighboring gene STARR-seq mESC enhancer starr_11765 Neighboring gene STARR-seq mESC enhancer starr_11766 Neighboring gene STARR-seq mESC enhancer starr_11767 Neighboring gene VISTA enhancer mm1494 Neighboring gene predicted gene, 52708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-expressed protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026300.2 → NP_080576.1  testis-expressed protein 46

    See identical proteins and their annotated locations for NP_080576.1

    Status: PROVISIONAL

    Source sequence(s)
    AK016074
    Consensus CDS
    CCDS18808.1
    UniProtKB/TrEMBL
    A3KG95, Q9CPU3
    Related
    ENSMUSP00000038976.3, ENSMUST00000046647.3
    Conserved Domains (1) summary
    pfam17671
    Location:11 → 161
    DUF5531; Family of unknown function (DUF5531)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    136334313..136340590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250327.4 → XP_011248629.1  testis-expressed protein 46 isoform X1

    Conserved Domains (1) summary
    pfam17671
    Location:56 → 149
    DUF5531; Family of unknown function (DUF5531)
Nucleotide Protein Strain
Heading Accession and Version

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