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SFTPD surfactant protein D [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 678657, updated on 5-Mar-2024

Summary

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Official Symbol
SFTPDprovided by VGNC
Official Full Name
surfactant protein Dprovided by VGNC
Primary source
VGNC:VGNC:77190
Locus tag
EGK_19692
See related
Ensembl:ENSMMUG00000002787
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (58174264..58184555)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (52636227..52646517)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 254 Neighboring gene nuclear nucleic acid-binding protein C1D pseudogene Neighboring gene uncharacterized LOC114669966 Neighboring gene mannose binding lectin 1 Neighboring gene surfactant protein A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Macaque multimeric soluble CD40 ligand and GITR ligand constructs are immunostimulatory molecules in vitro. Stone GW, et al. Clin Vaccine Immunol, 2006 Nov. PMID 16988005, Free PMC Article
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
pulmonary surfactant-associated protein D
Names
PSP-D
SP-D
lung surfactant protein D
surfactant, pulmonary-associated protein D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040193.1 → NP_001035283.1  pulmonary surfactant-associated protein D precursor

    See identical proteins and their annotated locations for NP_001035283.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ457096
    UniProtKB/Swiss-Prot
    Q1PBC5
    UniProtKB/TrEMBL
    A0A5F8ABG3, G7N227
    Conserved Domains (3) summary
    cd03591
    Location:262 → 375
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:130 → 202
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09006
    Location:224 → 269
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    58174264..58184555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015147131.2 → XP_015002617.1  pulmonary surfactant-associated protein D isoform X1

    UniProtKB/Swiss-Prot
    Q1PBC5
    UniProtKB/TrEMBL
    A0A5F8ABG3, G7N227
    Related
    ENSMMUP00000003737.2, ENSMMUT00000003955.4
    Conserved Domains (3) summary
    cd03591
    Location:262 → 375
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:130 → 202
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09006
    Location:224 → 269
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1PBC5.1 GenPept UniProtKB/Swiss-Prot:Q1PBC5

Gene LinkOut

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