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Pclaf PCNA clamp associated factor [ Mus musculus (house mouse) ]

Gene ID: 68026, updated on 23-Jun-2021

Summary

Official Symbol
Pclafprovided by MGI
Official Full Name
PCNA clamp associated factorprovided by MGI
Primary source
MGI:MGI:1915276
See related
Ensembl:ENSMUSG00000040204
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Paf; PAF15; p15(P; Ns5apt9; Ns5atp9; AA409629; p15(PAF); mKIAA0101; 2810417H13Rik
Expression
Biased expression in liver E14 (RPKM 37.6), CNS E11.5 (RPKM 37.4) and 9 other tissues See more
Orthologs
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Genomic context

See Pclaf in Genome Data Viewer
Location:
9; 9 C
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (65797605..65810833)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (65890323..65903551)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (65738130..65751358)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene predicted gene, 53535 Neighboring gene predicted gene, 23248 Neighboring gene casein kinase 1, gamma 1 Neighboring gene predicted gene, 22657 Neighboring gene peptidylprolyl isomerase B Neighboring gene sorting nexin 22

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC29306

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA replication ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in centrosome cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in response to UV ISO
Inferred from Sequence Orthology
more info
 
involved_in translesion synthesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in translesion synthesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
PCNA-associated factor
Names
HCV NS5A-transactivated protein 9 homolog
PCNA-associated factor of 15 kDa
p15PAF

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026515.2NP_080791.2  PCNA-associated factor

    See identical proteins and their annotated locations for NP_080791.2

    Status: VALIDATED

    Source sequence(s)
    AC112676, AK011090, AK011835
    Consensus CDS
    CCDS23299.1
    UniProtKB/Swiss-Prot
    Q9CQX4
    Related
    ENSMUSP00000038877.7, ENSMUST00000045802.7
    Conserved Domains (1) summary
    pfam15715
    Location:173
    PAF; PCNA-associated factor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    65797605..65810833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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