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Tceal9 transcription elongation factor A like 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680354, updated on 13-Apr-2024

Summary

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Official Symbol
Tceal9provided by RGD
Official Full Name
transcription elongation factor A like 9provided by RGD
Primary source
RGD:1592975
See related
Ensembl:ENSRNOG00000034198 AllianceGenome:RGD:1592975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Wbp5; RGD1560111
Summary
Predicted to enable WW domain binding activity. Predicted to be active in nucleus. Orthologous to human TCEAL9 (transcription elongation factor A like 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 1757.9), Lung (RPKM 699.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tceal9 in Genome Data Viewer
Location:
Xq32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (104037274..104039345)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (99245645..99247720)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (106791333..106794667)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484140 Neighboring gene programmed cell death 6, pseudogene 1 Neighboring gene small nuclear ribonucleoprotein polypeptide C, pseudogene 9 Neighboring gene brain expressed X-linked 3 Neighboring gene developmental pluripotency-associated 4, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands. Bedford MT, et al. EMBO J, 1997 May 1. PMID 9171351, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC188857

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables WW domain binding ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
transcription elongation factor A protein-like 9
Names
WW domain-binding protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127502.2 → NP_001120974.1  transcription elongation factor A protein-like 9

    See identical proteins and their annotated locations for NP_001120974.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    A0A8I5ZNB4, B2RYT6
    Related
    ENSRNOP00000050036.3, ENSRNOT00000050302.5
    Conserved Domains (1) summary
    pfam04538
    Location:44 → 102
    BEX; Brain expressed X-linked like family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    104037274..104039345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006257281.4 → XP_006257343.1  transcription elongation factor A protein-like 9 isoform X1

    See identical proteins and their annotated locations for XP_006257343.1

    UniProtKB/TrEMBL
    A0A8I5ZNB4, B2RYT6
    Conserved Domains (1) summary
    pfam04538
    Location:44 → 102
    BEX; Brain expressed X-linked like family

  2. XM_008773438.3 → XP_008771660.1  transcription elongation factor A protein-like 9 isoform X1

    See identical proteins and their annotated locations for XP_008771660.1

    UniProtKB/TrEMBL
    A0A8I5ZNB4, B2RYT6
    Conserved Domains (1) summary
    pfam04538
    Location:44 → 102
    BEX; Brain expressed X-linked like family
Nucleotide Protein Strain
Heading Accession and Version

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