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2700062C07Rik RIKEN cDNA 2700062C07 gene [ Mus musculus (house mouse) ]

Gene ID: 68046, updated on 5-Mar-2024

Summary

Official Symbol
2700062C07Rikprovided by MGI
Official Full Name
RIKEN cDNA 2700062C07 geneprovided by MGI
Primary source
MGI:MGI:1915296
See related
Ensembl:ENSMUSG00000024273 AllianceGenome:MGI:1915296
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C18orf21 (chromosome 18 open reading frame 21). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 9.8), CNS E14 (RPKM 9.2) and 28 other tissues See more
Orthologs
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Genomic context

Location:
18 A2; 18 13.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (24603928..24610824)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (24470871..24477767)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32547 Neighboring gene microRNA 187 Neighboring gene predicted gene, 32436 Neighboring gene predicted gene, 54038 Neighboring gene regulation of nuclear pre-mRNA domain containing 1A Neighboring gene STARR-positive B cell enhancer ABC_E9972 Neighboring gene STARR-seq mESC enhancer starr_44068 Neighboring gene STARR-seq mESC enhancer starr_44069 Neighboring gene STARR-seq mESC enhancer starr_44070 Neighboring gene STARR-seq mESC enhancer starr_44071 Neighboring gene solute carrier family 39 (metal ion transporter), member 6 Neighboring gene STARR-positive B cell enhancer ABC_E8706

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC103375

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0711 protein C18orf21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026529.4NP_080805.1  UPF0711 protein C18orf21 homolog

    See identical proteins and their annotated locations for NP_080805.1

    Status: PROVISIONAL

    Source sequence(s)
    AC125096
    Consensus CDS
    CCDS29101.1
    UniProtKB/Swiss-Prot
    Q5XFZ0, Q9CXC1, Q9CZ41
    Related
    ENSMUSP00000095251.4, ENSMUST00000097646.5
    Conserved Domains (1) summary
    pfam15719
    Location:27217
    DUF4674; Domain of unknown function (DUF4674)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    24603928..24610824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)