Format

Send to:

Choose Destination

LOC680920 similar to natural cytotoxicity triggering receptor 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680920, updated on 30-Sep-2021

Summary

Official Symbol
LOC680920provided by RGD
Official Full Name
similar to natural cytotoxicity triggering receptor 2provided by RGD
Primary source
RGD:1585869
See related
EnsemblRapid:ENSRNOG00000042468
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 12.9), Lung (RPKM 2.4) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC680920 in Genome Data Viewer
Location:
9q12
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (12843542..12858881)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (14850763..14864999)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells 3 Neighboring gene triggering receptor expressed on myeloid cells 1 Neighboring gene natural cytotoxicity triggering receptor 2 Neighboring gene uncharacterized LOC120094839 Neighboring gene RGD1565959

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
trem-like transcript 4 protein; triggering receptor expressed on myeloid cells 1-like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    12843542..12858881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244494.4XP_006244556.2  triggering receptor expressed on myeloid cells 1-like isoform X1

  2. XM_039084482.1XP_038940410.1  trem-like transcript 4 protein isoform X2

    Related
    ENSRNOP00000048233.5, ENSRNOT00000040323.6
    Conserved Domains (2) summary
    cd00096
    Location:2833
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:24108
    Ig; Immunoglobulin domain
Support Center