U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ncr2l1 natural cytotoxicity triggering receptor 2 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680920, updated on 29-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Ncr2l1provided by RGD
Official Full Name
natural cytotoxicity triggering receptor 2 like 1provided by RGD
Primary source
RGD:1585869
See related
Ensembl:ENSRNOG00000042468 AllianceGenome:RGD:1585869
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 12.9), Lung (RPKM 2.4) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
9q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (20341134..20355151)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (12843542..12858881)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (14850763..14864999)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells 3 Neighboring gene triggering receptor expressed on myeloid cells 1 Neighboring gene natural cytotoxicity triggering receptor 2 Neighboring gene uncharacterized LOC120094839 Neighboring gene RGD1565959

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
trem-like transcript 4 protein; triggering receptor expressed on myeloid cells 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    20341134..20355151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244494.5 → XP_006244556.2  triggering receptor expressed on myeloid cells 1-like isoform X1

    UniProtKB/TrEMBL
    F1LTR7

  2. XM_039084482.2 → XP_038940410.1  trem-like transcript 4 protein isoform X2

    UniProtKB/TrEMBL
    D3ZDX3
    Related
    ENSRNOP00000048233.5
    Conserved Domains (2) summary
    cd00096
    Location:28 → 33
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:24 → 108
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases