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Atg101 autophagy related 101 [ Mus musculus (house mouse) ]

Gene ID: 68118, updated on 23-Jun-2021

Summary

Official Symbol
Atg101provided by MGI
Official Full Name
autophagy related 101provided by MGI
Primary source
MGI:MGI:1915368
See related
Ensembl:ENSMUSG00000037204
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA407441; AU022967; 9430023L20Rik
Expression
Ubiquitous expression in liver adult (RPKM 17.4), colon adult (RPKM 16.4) and 28 other tissues See more
Orthologs
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Genomic context

See Atg101 in Genome Data Viewer
Location:
15; 15 F1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101182182..101188828)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101284301..101290947)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101114732..101121365)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene predicted gene, 53913 Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene small integral membrane protein 41 Neighboring gene predicted gene, 41403 Neighboring gene predicted gene, 52200

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in autophagosome assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in phagophore assembly site ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
autophagy-related protein 101

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026566.2NP_080842.1  autophagy-related protein 101

    See identical proteins and their annotated locations for NP_080842.1

    Status: PROVISIONAL

    Source sequence(s)
    AK007505
    Consensus CDS
    CCDS27849.1
    UniProtKB/Swiss-Prot
    Q9D8Z6
    Related
    ENSMUSP00000045474.7, ENSMUST00000048393.8
    Conserved Domains (1) summary
    pfam07855
    Location:9172
    ATG101; Autophagy-related protein 101

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101182182..101188828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521310.4XP_006521373.1  autophagy-related protein 101 isoform X1

    See identical proteins and their annotated locations for XP_006521373.1

    UniProtKB/Swiss-Prot
    Q9D8Z6
    Conserved Domains (1) summary
    pfam07855
    Location:9172
    ATG101; Autophagy-related protein 101
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