Format

Send to:

Choose Destination

LOC681458 similar to stearoyl-coenzyme A desaturase 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681458, updated on 6-May-2021

Summary

Symbol
LOC681458provided by RGD
Full Name
similar to stearoyl-coenzyme A desaturase 3provided by RGD
Primary source
RGD:1595370
See related
Ensembl:ENSRNOG00000013279
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 919.1), Liver (RPKM 799.8) and 8 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC681458 in Genome Data Viewer
Location:
1q54
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (243093057..243114451)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (263968156..264003991)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 2 Neighboring gene U6 spliceosomal RNA Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene acyl-CoA desaturase 1-like Neighboring gene uncharacterized LOC120100040

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables iron ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables palmitoyl-CoA 9-desaturase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables stearoyl-CoA 9-desaturase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in monounsaturated fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in response to fatty acid IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in unsaturated fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in integral component of endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    243093057..243114451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008760487.3XP_008758709.3  acyl-CoA desaturase 3

    Conserved Domains (1) summary
    cd03505
    Location:91328
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
Support Center