Ints15 integrator complex subunit 15 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ints15provided by RGD
Official Full Name: integrator complex subunit 15provided by RGD
Primary source: RGD:1584479
See related: Ensembl:ENSRNOG00000024567 AllianceGenome:RGD:1584479
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human C7orf26 (chromosome 7 open reading frame 26). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Thymus (RPKM 60.6), Kidney (RPKM 48.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 12p11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	12	NC_086030.1 (16358644..16373763)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	12	NC_051347.1 (11245045..11260170)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	12	NC_005111.4 (13299651..13313733)

Chromosome 12 - NC_086030.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH137324 (e-PCR)
- UniSTS:219412

UniSTS:235357 (e-PCR)
- UniSTS:235357

RH141332 (e-PCR)
- UniSTS:223328

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
part_of integrator complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: integrator complex subunit 15

Names: uncharacterized protein C7orf26 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001398880.1 → NP_001385809.1 integrator complex subunit 15

Status: VALIDATED

Source sequence(s)

JAXUCZ010000012

UniProtKB/TrEMBL

A6K1L7

Conserved Domains (1) summary

pfam14964
Location:2 → 380

DUF4507; Domain of unknown function (DUF4507)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086030.1 Reference GRCr8

Range

16358644..16373763

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017598485.3 → XP_017453974.1 integrator complex subunit 15 isoform X1

UniProtKB/TrEMBL

F1M0G5

Related

ENSRNOP00000037318.4
XM_039089852.2 → XP_038945780.1 integrator complex subunit 15 isoform X2

Conserved Domains (1) summary

pfam14964
Location:1 → 303

DUF4507; Domain of unknown function (DUF4507)