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Rpl34 ribosomal protein L34 [ Mus musculus (house mouse) ]

Gene ID: 68436, updated on 23-Jun-2021

Summary

Official Symbol
Rpl34provided by MGI
Official Full Name
ribosomal protein L34provided by MGI
Primary source
MGI:MGI:1915686
See related
Ensembl:ENSMUSG00000062006
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1100001I22Rik
Expression
Ubiquitous expression in large intestine adult (RPKM 318.4), placenta adult (RPKM 290.7) and 28 other tissues See more
Orthologs
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Genomic context

See Rpl34 in Genome Data Viewer
Location:
3; 3 G3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (130520476..130524047, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (130726827..130730398, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (130429749..130433226, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36373 Neighboring gene oligosaccharyltransferase complex subunit (non-catalytic) Neighboring gene predicted gene 43522 Neighboring gene predicted gene, 36443

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC103270

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005859.3NP_001005859.1  60S ribosomal protein L34

    See identical proteins and their annotated locations for NP_001005859.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC154993, AK003177, CJ041925
    Consensus CDS
    CCDS17841.1
    UniProtKB/Swiss-Prot
    Q9D1R9
    Related
    ENSMUSP00000078092.7, ENSMUST00000079085.11
    Conserved Domains (1) summary
    pfam01199
    Location:196
    Ribosomal_L34e; Ribosomal protein L34e
  2. NM_001287581.1NP_001274510.1  60S ribosomal protein L34

    See identical proteins and their annotated locations for NP_001274510.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    BC058118, CJ041925, CJ043938, CJ044447
    Consensus CDS
    CCDS17841.1
    UniProtKB/Swiss-Prot
    Q9D1R9
    Related
    ENSMUSP00000142486.2, ENSMUST00000196202.5
    Conserved Domains (1) summary
    pfam01199
    Location:196
    Ribosomal_L34e; Ribosomal protein L34e
  3. NM_026724.2NP_081000.1  60S ribosomal protein L34

    See identical proteins and their annotated locations for NP_081000.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    BC058118, CJ041925, CJ043938
    Consensus CDS
    CCDS17841.1
    UniProtKB/Swiss-Prot
    Q9D1R9
    Related
    ENSMUSP00000086614.5, ENSMUST00000062601.14
    Conserved Domains (1) summary
    pfam01199
    Location:196
    Ribosomal_L34e; Ribosomal protein L34e

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    130520476..130524047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163263.1XP_036019156.1  60S ribosomal protein L34 isoform X1

    Conserved Domains (1) summary
    pfam01199
    Location:196
    Ribosomal_L34e; Ribosomal protein L34e
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