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Zmat4 zinc finger, matrin type 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 684961, updated on 5-Mar-2024

Summary

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Official Symbol
Zmat4provided by RGD
Official Full Name
zinc finger, matrin type 4provided by RGD
Primary source
RGD:1584398
See related
Ensembl:ENSRNOG00000042690 AllianceGenome:RGD:1584398
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable identical protein binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 64.5), Thymus (RPKM 21.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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Location:
16q12.5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (74671975..75063805, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (67969410..68361377, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (72762558..73152921, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553995 Neighboring gene uncharacterized LOC134482410 Neighboring gene uncharacterized LOC120097517 Neighboring gene uncharacterized LOC134482523 Neighboring gene 40S ribosomal protein S8 pseudogene Neighboring gene uncharacterized LOC134482412 Neighboring gene uncharacterized LOC120097520 Neighboring gene uncharacterized LOC134482411

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC188207

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger matrin-type protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134747.1 → NP_001128219.1  zinc finger matrin-type protein 4

    See identical proteins and their annotated locations for NP_001128219.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168220
    UniProtKB/TrEMBL
    A6IW38, B4F7C6, F1LU08
    Related
    ENSRNOP00000043474.5, ENSRNOT00000048602.5
    Conserved Domains (3) summary
    smart00451
    Location:142 → 176
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:147 → 169
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:15 → 38
    zf-met; Zinc-finger of C2H2 type

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    74671975..75063805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039094822.2 → XP_038950750.1  zinc finger matrin-type protein 4 isoform X1

    UniProtKB/TrEMBL
    A6IW38, B4F7C6, F1LU08
    Conserved Domains (3) summary
    smart00451
    Location:142 → 176
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:147 → 169
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:15 → 38
    zf-met; Zinc-finger of C2H2 type

  2. XM_039094823.2 → XP_038950751.1  zinc finger matrin-type protein 4 isoform X2

    Conserved Domains (3) summary
    smart00451
    Location:45 → 79
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:50 → 72
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:101 → 125
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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