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Tmem109 transmembrane protein 109 [ Mus musculus (house mouse) ]

Gene ID: 68539, updated on 23-Jun-2021

Summary

Official Symbol
Tmem109provided by MGI
Official Full Name
transmembrane protein 109provided by MGI
Primary source
MGI:MGI:1915789
See related
Ensembl:ENSMUSG00000034659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C77652; AA958958; 1110006I15Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 107.7), lung adult (RPKM 86.9) and 27 other tissues See more
Orthologs
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Genomic context

See Tmem109 in Genome Data Viewer
Location:
19; 19 A
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10848021..10859107, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10870657..10881743, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10945150..10956233, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene CD6 antigen Neighboring gene solute carrier family 15, member 3 Neighboring gene transmembrane protein 132A Neighboring gene pre-mRNA processing factor 19 Neighboring gene zona pellucida glycoprotein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables voltage-gated ion channel activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 109
Names
mg23
mitsugumin-23
mitsugumin23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134142.1NP_598903.1  transmembrane protein 109 precursor

    See identical proteins and their annotated locations for NP_598903.1

    Status: PROVISIONAL

    Source sequence(s)
    BC022997
    Consensus CDS
    CCDS29590.1
    UniProtKB/Swiss-Prot
    Q3UBX0
    Related
    ENSMUSP00000039529.9, ENSMUST00000038128.15
    Conserved Domains (1) summary
    pfam14965
    Location:57231
    BRI3BP; Negative regulator of p53/TP53

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    10848021..10859107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527317.1XP_006527380.1  transmembrane protein 109 isoform X1

    See identical proteins and their annotated locations for XP_006527380.1

    UniProtKB/Swiss-Prot
    Q3UBX0
    Related
    ENSMUSP00000120261.2, ENSMUST00000133303.8
    Conserved Domains (1) summary
    pfam14965
    Location:57231
    BRI3BP; Negative regulator of p53/TP53
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